BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0109.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase [Herbaspi...   465   e-132
gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase [Herbaspi...   241   3e-65
gi|300312682|ref|YP_003776774.1| iron-regulated protein [Herbasp...   239   1e-64

>gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  465 bits (1196), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MMLHIPEVLSAEQVRHIRAELARADWVDGRATVGDQGARVKRNRQLPEHSPLGFKLGEII 60
           MMLHIPEVLSAEQVRHIRAELARADWVDGRATVGDQGARVKRNRQLPEHSPLGFKLGEII
Sbjct: 1   MMLHIPEVLSAEQVRHIRAELARADWVDGRATVGDQGARVKRNRQLPEHSPLGFKLGEII 60

Query: 61  LEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNLPNAVGSIRTDVSSTLF 120
           LEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNLPNAVGSIRTDVSSTLF
Sbjct: 61  LEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNLPNAVGSIRTDVSSTLF 120

Query: 121 LSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWTQSMV 180
           LSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWTQSMV
Sbjct: 121 LSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWTQSMV 180

Query: 181 RDDWKRSMLFELDRNIFGLREKIGDTEEVLGLTGHYHNLLRQWAEV 226
           RDDWKRSMLFELDRNIFGLREKIGDTEEVLGLTGHYHNLLRQWAEV
Sbjct: 181 RDDWKRSMLFELDRNIFGLREKIGDTEEVLGLTGHYHNLLRQWAEV 226


>gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  241 bits (616), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/225 (51%), Positives = 160/225 (71%), Gaps = 3/225 (1%)

Query: 1   MMLHIPEVLSAEQVRHIRAELARADWVDGRATVGDQGARVKRNRQLPEHSPLGFKLGEII 60
           MMLH+ +VLS ++V   RA L +A W+DGR T G     +K+NRQLPE S     L +++
Sbjct: 1   MMLHLKQVLSTDEVTRARALLEQAQWIDGRVTSGSLPDTLKQNRQLPEQSASAVPLQQMV 60

Query: 61  LEALRKNPLFFAAALPKKTIPPLFNSY-EGGEHYGLHVDGSVRNLPNAVGSIRTDVSSTL 119
           L ALR+N LFF+AALP++ + P+FN Y  GG+H G HVD ++R +P+    +RTDVS TL
Sbjct: 61  LAALRRNTLFFSAALPRQIVTPMFNRYGAGGDHLGDHVDVAMRFMPDG-RRVRTDVSCTL 119

Query: 120 FLSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWTQSM 179
           FLS+PEEY+GGELVV D +    +KLPAGD+++YP+T++HRVEPV  G R  SFFWT+SM
Sbjct: 120 FLSEPEEYEGGELVVADHWEDRHIKLPAGDMLLYPATTIHRVEPVRTGIRYASFFWTESM 179

Query: 180 VRDDWKRSMLFELDRNIFGLREKI-GDTEEVLGLTGHYHNLLRQW 223
           VR+  +R +LF++D  +  LR ++  D   V+GL+  YHNLLR W
Sbjct: 180 VREGERRQLLFDMDCQLMSLRSRLAADDAAVVGLSATYHNLLRMW 224


>gi|300312682|ref|YP_003776774.1| iron-regulated protein
           [Herbaspirillum seropedicae SmR1]
          Length = 228

 Score =  239 bits (611), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 156/228 (68%), Gaps = 2/228 (0%)

Query: 1   MMLHIPEVLSAEQVRHIRAELARAD--WVDGRATVGDQGARVKRNRQLPEHSPLGFKLGE 58
           M++ IP++L  + ++ +R+ L +A   WVDGR T G QGA VK N+Q+ EHS +  +   
Sbjct: 1   MLITIPQLLDTQALQTVRSLLEQAGEAWVDGRVTAGYQGAPVKFNQQIDEHSEVALQCQR 60

Query: 59  IILEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVRNLPNAVGSIRTDVSST 118
           II+ AL ++P F +AALP    PP+FN Y  G H+G HVDGSVR  P+    +RTDVS+T
Sbjct: 61  IIVSALERHPRFISAALPNLIYPPMFNRYGEGMHFGAHVDGSVRIHPHNGRKLRTDVSAT 120

Query: 119 LFLSDPEEYDGGELVVVDTYGTHEVKLPAGDLIVYPSTSLHRVEPVTRGARVCSFFWTQS 178
           LFL+DP +YDGG+L + D+YG H VKL AGD+++YP+TSLH V PVTRG R+  FFW QS
Sbjct: 121 LFLADPGDYDGGDLQIDDSYGAHSVKLAAGDMVLYPATSLHTVTPVTRGVRLACFFWVQS 180

Query: 179 MVRDDWKRSMLFELDRNIFGLREKIGDTEEVLGLTGHYHNLLRQWAEV 226
           +VRDD +R +LF++D  I  L +   D      L G YHNLLRQW++ 
Sbjct: 181 LVRDDGQRQLLFDMDNAIQRLNQTEADALARRTLVGCYHNLLRQWSDT 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 757,119
Number of extensions: 31147
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)