BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0104.p (458 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312557|ref|YP_003776649.1| hydroxy-atrazine ethyl amino hy... 937 0.0 gi|300309804|ref|YP_003773896.1| hydroxydechloroatrazine ethylam... 260 1e-70 gi|300312562|ref|YP_003776654.1| guanine deaminase [Herbaspirill... 98 1e-21 gi|300311604|ref|YP_003775696.1| formiminoglutamate deiminase [H... 57 2e-09 >gi|300312557|ref|YP_003776649.1| hydroxy-atrazine ethyl amino hydrolase [Herbaspirillum seropedicae SmR1] Length = 458 Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/457 (99%), Positives = 457/457 (100%) Query: 1 MQAQATGKTLLIRNARILVTMNESREEIPDGALYIRNNVIEQVGQTADLPQDADEIIDAR 60 MQAQATGKTLLIRNARILVTMNESREEIPDGALYIRNNVIEQVGQTADLPQDADEIIDAR Sbjct: 1 MQAQATGKTLLIRNARILVTMNESREEIPDGALYIRNNVIEQVGQTADLPQDADEIIDAR 60 Query: 61 HHIVLPGLINTHHHMYQSLTRAIPAAQNGELFNWLTKLYPIWAGLTPEMIQVSTLTAMAE 120 HHIVLPGLINTHHHMYQSLTRAIP+AQNGELFNWLTKLYPIWAGLTPEMIQVSTLTAMAE Sbjct: 61 HHIVLPGLINTHHHMYQSLTRAIPSAQNGELFNWLTKLYPIWAGLTPEMIQVSTLTAMAE 120 Query: 121 LILSGCTTSSDHLYIYPNQTRLDDSLEAAARIGMRFHGARGAMSVGQSKGGLPPDRVVED 180 LILSGCTTSSDHLYIYPNQTRLDDSLEAAARIGMRFHGARGAMSVGQSKGGLPPDRVV+D Sbjct: 121 LILSGCTTSSDHLYIYPNQTRLDDSLEAAARIGMRFHGARGAMSVGQSKGGLPPDRVVQD 180 Query: 181 EAAILKDTQRLIETYHDHQRHAMQRIVVAPCSPFSVSRELMREAAELARHYGVSLHTHLA 240 EAAILKDTQRLIETYHDHQRHAMQRIVVAPCSPFSVSRELMREAA+LARHYGVSLHTHLA Sbjct: 181 EAAILKDTQRLIETYHDHQRHAMQRIVVAPCSPFSVSRELMREAADLARHYGVSLHTHLA 240 Query: 241 ENVNDIAYSREKFNMSPAEYAEDCGWVGHDVWHAHCVQLDAHGIDLFARTGTGVAHCPCS 300 ENVNDIAYSREKFNMSPAEYAEDCGWVGHDVWHAHCVQLDAHGIDLFARTGTGVAHCPCS Sbjct: 241 ENVNDIAYSREKFNMSPAEYAEDCGWVGHDVWHAHCVQLDAHGIDLFARTGTGVAHCPCS 300 Query: 301 NMRLASGIAPIRKMLDAGVPVGLGVDGSASNDSAHMLGEVRQAMLLQRVGFGPDAMTARQ 360 NMRLASGIAPIRKMLDAGVPVGLGVDGSASNDSAHMLGEVRQAMLLQRVGFGPDAMTARQ Sbjct: 301 NMRLASGIAPIRKMLDAGVPVGLGVDGSASNDSAHMLGEVRQAMLLQRVGFGPDAMTARQ 360 Query: 361 ALEVATLGGARVLNRDDIGALKPGMSADVVMFDTRQIAFAGALHDPVAALVFCTPANVDC 420 ALEVATLGGA+VLNRDDIGALKPGMSADVVMFDTRQIAFAGALHDPVAALVFCTPANVDC Sbjct: 361 ALEVATLGGAKVLNRDDIGALKPGMSADVVMFDTRQIAFAGALHDPVAALVFCTPANVDC 420 Query: 421 SIINGRVIVREGQLTSIELGAVLERHNQLSLALAQGV 457 SIINGRVIVREGQLTSIELGAVLERHNQLSLALAQGV Sbjct: 421 SIINGRVIVREGQLTSIELGAVLERHNQLSLALAQGV 457 >gi|300309804|ref|YP_003773896.1| hydroxydechloroatrazine ethylaminohydrolase [Herbaspirillum seropedicae SmR1] Length = 471 Score = 260 bits (665), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 168/457 (36%), Positives = 235/457 (51%), Gaps = 30/457 (6%) Query: 8 KTLLIRNARILVTM---NESREEIPDGALYIRNNVIEQVGQTADLPQDADEIIDARHHIV 64 T LIRN + ++T +R PD + + + VI +GQ LP +E+IDA H + Sbjct: 2 STFLIRNLQAIMTGLPGAAARHAGPD--IRVSDGVIAAIGQLDALP--GEELIDASHCVA 57 Query: 65 LPGLINTHHHMYQSLTRAIPAAQNGELFNWLTKL-YPIWAGLTPEMIQVSTLTAMAELIL 123 P +NTHHH++QSL + P N L WL Y A ++ +++ M EL+ Sbjct: 58 YPAWVNTHHHLFQSLLKGDPLGINATLTPWLAATPYRYRASFDADLFRLAARIGMVELMR 117 Query: 124 SGCTTSSDHLYIYPNQTRLDDS---LEAAARIGMRFHGARG-AMSVGQSKGGLPPDRVVE 179 SGC T +DH Y+Y D S E A ++G+RF RG A Q + L E Sbjct: 118 SGCGTIADHNYLYYPGMPFDTSEILFEEAQQLGLRFVLCRGTATRTRQLEAELSSALRPE 177 Query: 180 DEAAILKDTQRLIETYHDHQRHAMQRIVVAPCSP-FSVSRELMREAAELARHYGVSLHTH 238 L D Q L +HD +M+R+V+AP +P +S + + +RE A AR G+ LH+H Sbjct: 178 TLDGFLADMQGLAGRFHDPAPASMRRVVMAPTTPLYSAAPDELREMAVAAREMGLRLHSH 237 Query: 239 LAENVNDIAYSREKFNMSPAEYAEDCGWVGHDVWHAHCVQLDAHGIDLFARTGTGVAHCP 298 L+E V + P E+ E GW+G DVW AH V+LDA I L TGTG+AHCP Sbjct: 238 LSETVGYQDSAHAMHGCRPVEFCERVGWLGRDVWFAHLVKLDAEEIQLLGGTGTGIAHCP 297 Query: 299 CSNMRLASGIAPIRKMLDAGVPVGLGVDGSASNDSAHMLGEVRQAMLLQRV--------G 350 SN RL SGIAPIR + AGVPV +GVDG+ASN++A M+ E A L+QR Sbjct: 298 QSNGRLGSGIAPIRALEAAGVPVSIGVDGAASNEAADMISETHAAWLMQRARRGQEATPS 357 Query: 351 F-------GPDAMTARQALEVATLGGARVLNRDDIGALKPGMSADVVMFDTRQIAFAGAL 403 F G DA T + T GGARVL D + L+ G AD+ ++ + G L Sbjct: 358 FRGGHFEGGADAATVEDVVRWGTTGGARVLGLDALDGLQVGQQADIALYRLDDPRYFG-L 416 Query: 404 HDP-VAALVFCTPANVDCSIINGRVIVREGQLTSIEL 439 HDP + + + + GR +VRE + ++L Sbjct: 417 HDPAIGPVASGGRPFLKAMWVGGRAVVREDAIPGVDL 453 >gi|300312562|ref|YP_003776654.1| guanine deaminase [Herbaspirillum seropedicae SmR1] Length = 432 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 167/376 (44%), Gaps = 32/376 (8%) Query: 30 DGALYIRNNVIEQVGQTADL-----PQDADEIIDARHHIVLPGLINTHHHMYQSLTRAIP 84 DG L +++ I G A+L P+ E D R I+ PG I+TH H Q+ P Sbjct: 31 DGLLLVQDGKIRAAGDYAELSASLPPEAVTE--DLRGKILCPGFIDTHVHYPQTDIIGSP 88 Query: 85 AAQNGELFNWLTKL-YPIWAGLT-PEMIQVSTLTAMAELILSGCTTSSDHLYIYPNQTRL 142 A L WL +P PE +AEL+ +G T+++ + ++P + Sbjct: 89 APG---LLPWLDNYTFPAERRFQQPEHAAEVADFFLAELLRNGTTSAAVYCTVHPQS--V 143 Query: 143 DDSLEAAARIGMRFHGARGAMSVGQSKGGLPPDRVVEDEAAILKDTQRLIETYHDHQR-H 201 D A+ +R + M PD + + + +++++ LI +H+ R H Sbjct: 144 DAFFAASHARNLRMVAGKCLMDRHA------PDFLRDTAESGVRESEALIGRWHNKGRQH 197 Query: 202 AMQRIVVAPCSPFSVSRELMREAAELARHY-GVSLHTHLAENVNDIAYSREKF--NMSPA 258 + AP S + E M+ A ELA Y + TH+AEN +++ + +E + S Sbjct: 198 YAITVRFAPTS----THEQMKLAGELAAQYPDTYIQTHVAENTDEVKWVKELYPDARSYL 253 Query: 259 EYAEDCGWVGHDVWHAHCVQLDAHGIDLFARTGTGVAHCPCSNMRLASGIAPIRKMLDAG 318 + + G + +AHC+ LD A T + CP SN+ L SG+ + A Sbjct: 254 DVYDGYGLMRQRALYAHCIWLDDQDRARMAATQSAATLCPTSNLFLGSGLFDFARADAAR 313 Query: 319 VPVGLGVDGSASNDSAHMLGEVRQAMLLQRVGFGPDAMTARQALEVATLGGARVLNRD-D 377 +P+ + D S ML + + + R+ G + A++ +ATLGGAR L + Sbjct: 314 LPLSVATDVGGGT-SFSMLQTMNELYKVARM--GGTYLPAQRMFYLATLGGARALQLEGT 370 Query: 378 IGALKPGMSADVVMFD 393 IG+ PG AD ++ D Sbjct: 371 IGSFTPGCDADFIVLD 386 >gi|300311604|ref|YP_003775696.1| formiminoglutamate deiminase [Herbaspirillum seropedicae SmR1] Length = 482 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 91/401 (22%), Positives = 154/401 (38%), Gaps = 39/401 (9%) Query: 64 VLPGLINTHHHMYQSLTRAIPAAQNG---ELFNWLTKLYPIWAGLTPEMIQVSTLTAMAE 120 VLPG+ N H H +Q + ++W +Y L P ++ E Sbjct: 69 VLPGMPNLHSHAFQRAMAGLAETMGSPADSFWSWRELMYRFAQRLQPRQLEAIARQTYIE 128 Query: 121 LILSGCTTSSDHLYIY--PNQTRLDDSLEAAARIGMRFHGARGA----MSVGQSKGGL-- 172 ++ +G T+ + Y++ P+ D E A + ++ G G + V +GGL Sbjct: 129 MLKAGYTSVCEFHYLHHAPDGAPYADPAEMAWPL-LQAAGQSGIGMTLLPVLYQQGGLGG 187 Query: 173 -----PPDRVVEDEAAILKDTQRLIETYHDHQRHAMQRIVVAPCSPFSVS----RELMRE 223 R V + +L +RL++ ++ M+R VAP S +V+ EL+ Sbjct: 188 RPVSAEQRRFVAAPSWLLGLRERLLQHMPEND---MRRYGVAPHSLRAVAPTGLEELLSG 244 Query: 224 AAELARHYGVSLHTHLAENVNDIAYSREKFNMSPAEYAEDCGWVGHDVWHAHCVQLDAHG 283 A +H H+AE + ++ P ++ V H +D Sbjct: 245 LAGQPGGSDAPIHIHVAEQLREVEDCLAWSGQRPVQWLLSSQPVDARWCLVHATHMDDEE 304 Query: 284 IDLFARTGTGVAHCPCSNMRLASGIAPIRKMLDAGVPVGLGVDGSASNDSAHMLGEVRQA 343 A +G V CP + L G+ +++D+ G+G D SN + + E+R Sbjct: 305 YRAVAGSGAVVGLCPTTEANLGDGVIDAPRLIDSAARWGIGSD---SNIAISLRAELRLL 361 Query: 344 MLLQRVGFGP-------DAMTARQALEVATLGGARVLNRDDIGALKPGMSADVVMFDTRQ 396 QR+ DA L L G + L PG AD+V+ D Sbjct: 362 EYAQRLHHRRRNVLAVIDAPAVADRLFCQALAGGAQAAGRAVAGLMPGQRADLVVLDPDH 421 Query: 397 IAFAG-ALHDPVAALVFCT---PANVDCSIINGRVIVREGQ 433 + A + ++ALVFC P D + GR +V+EG+ Sbjct: 422 VNLAQRSSTQLLSALVFCEHDGPMIGDV-YVGGRQVVKEGR 461 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,473,192 Number of extensions: 63998 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 4 Length of query: 458 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 370 Effective length of database: 1,203,190 Effective search space: 445180300 Effective search space used: 445180300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)