BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0096.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312563|ref|YP_003776655.1| transcription regulator protein...   407   e-115
gi|300310688|ref|YP_003774780.1| transcription regulator protein...   144   6e-36

>gi|300312563|ref|YP_003776655.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  407 bits (1047), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/200 (99%), Positives = 200/200 (100%)

Query: 1   MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60
           MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI
Sbjct: 1   MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60

Query: 61  KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120
           KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL
Sbjct: 61  KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120

Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180
           YERGPKRGWTRIAEFL+AKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED
Sbjct: 121 YERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180

Query: 181 QLDASAQRAVEAFLYLYQPR 200
           QLDASAQRAVEAFLYLYQPR
Sbjct: 181 QLDASAQRAVEAFLYLYQPR 200


>gi|300310688|ref|YP_003774780.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  144 bits (363), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 117/198 (59%), Gaps = 1/198 (0%)

Query: 1   MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60
           MR K+ ERR A++  AAEVF E GFE ASMA ISARIGGSK TLY+YF SKEE+FV V  
Sbjct: 1   MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60

Query: 61  KQVGCQFEELFMAL-RNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPL 119
           +Q   Q E    AL ++  D++  L       +  + +   +   R+ +  +G+S++G  
Sbjct: 61  EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120

Query: 120 LYERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAE 179
            +E GPK G  RIA FL  +M+ G+L + DP LA +Q   L++ E ++  ML + + I+ 
Sbjct: 121 FHESGPKLGMERIAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180

Query: 180 DQLDASAQRAVEAFLYLY 197
            ++     RAVE FL  Y
Sbjct: 181 PRMKRMVGRAVETFLAAY 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 557,644
Number of extensions: 21015
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)