BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0085.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312573|ref|YP_003776665.1| dihydrodipicolinate synthase [H... 596 e-172 gi|300310616|ref|YP_003774708.1| dihydrodipicolinate synthase/N-... 88 1e-18 gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-... 77 2e-15 gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehy... 76 4e-15 >gi|300312573|ref|YP_003776665.1| dihydrodipicolinate synthase [Herbaspirillum seropedicae SmR1] Length = 292 Score = 596 bits (1537), Expect = e-172, Method: Compositional matrix adjust. Identities = 292/292 (100%), Positives = 292/292 (100%) Query: 1 MIKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELI 60 MIKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELI Sbjct: 1 MIKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELI 60 Query: 61 KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYNRPTQEGMYLHFK 120 KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYNRPTQEGMYLHFK Sbjct: 61 KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYNRPTQEGMYLHFK 120 Query: 121 KIAESVDLPVILYNVPGRTVADMSNETILRLAQVKGIVGVKDATGNIARGTDLIRLAPKS 180 KIAESVDLPVILYNVPGRTVADMSNETILRLAQVKGIVGVKDATGNIARGTDLIRLAPKS Sbjct: 121 KIAESVDLPVILYNVPGRTVADMSNETILRLAQVKGIVGVKDATGNIARGTDLIRLAPKS 180 Query: 181 FAVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNNKLLPLH 240 FAVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNNKLLPLH Sbjct: 181 FAVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNNKLLPLH 240 Query: 241 NKLFVEPNPVPLKWAMQEMGLIPSGMRLPLAPLGAAYHDTVRAALRESGVLK 292 NKLFVEPNPVPLKWAMQEMGLIPSGMRLPLAPLGAAYHDTVRAALRESGVLK Sbjct: 241 NKLFVEPNPVPLKWAMQEMGLIPSGMRLPLAPLGAAYHDTVRAALRESGVLK 292 >gi|300310616|ref|YP_003774708.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] Length = 305 Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 15/300 (5%) Query: 2 IKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIA-EGTDSIVIVGTTGESPTVSMEEHCELI 60 ++G + A VTP +DG++D+ + +L W + +G +V++G GE +S E +I Sbjct: 5 LRGLVPAPVTPFTRDGAVDHAAIMRLGKWLGSFDGVKGLVVLGHAGEGTFLSQSEQAAVI 64 Query: 61 KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVP---YYNRPTQEGM-Y 116 + V+ T R+P+IAG T A E + A K GA A L V P + Q+G Sbjct: 65 ESFVKSTDGRVPVIAGITLEGTQVAAEEAKRAVKAGAAAGL-VYPSHGWLRFGYQKGAPQ 123 Query: 117 LHFKKIAESVDLPVILYNVPGRTVADMSNETILRLAQVKGIVGVKDATGNIARGTD---L 173 ++ I E LP+IL+ P T A + ET L +A + G+ +K+ N+ R + Sbjct: 124 DRYRAIYEESGLPLILFQYPDATKATYNLETQLDIAALPGVFAMKNGVRNMRRWDTEIPV 183 Query: 174 IRLAPKSFAVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELN 233 +R + + D + M + G + ++AP + +L A + + +A ++ Sbjct: 184 VRRERPDLQILTCHDEYLLHTM-FDVDGALVGYGSIAPELLIDLIAAGKAKDYRKARAIH 242 Query: 234 NKLLPLHNKLFVE----PNPVPLKWAMQEMGLIPSG-MRLPLAPLGAAYHDTVRAALRES 288 +KLLP+ ++ V LK A+ G++ +R PL PL + ALR + Sbjct: 243 DKLLPVTKNVYHRGSHMEGTVALKHALVARGILEHATVRSPLLPLEPGADVEIAKALRSA 302 >gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] Length = 306 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 136/292 (46%), Gaps = 13/292 (4%) Query: 1 MIKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELI 60 + +G T +G LD +G ++ ID+ I G++ + I+ E +S EE ++ Sbjct: 5 LYRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEERVQVQ 64 Query: 61 KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYN---RPTQEGMYL 117 +EH A R+P+I T + E + A+ GA + + PY+ R ++ +Y Sbjct: 65 NTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEKQIYE 124 Query: 118 HFKKIAESVDLPVILYNVPGRTVADMSNETILRLA-QVKGIVGVK-DATGNIARGTDLIR 175 +K +++++D+P+++ + P +S + R+A +++ + K + G ++ DLI Sbjct: 125 FYKHVSDAIDIPIMIQDAPVAGTP-LSAPFLARMAKEIEQVSYFKIETAGAASKLRDLIE 183 Query: 176 LAPKS-FAVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNN 234 L + + G++A + L ++T P + ++ A +G+I +A EL Sbjct: 184 LGGDAVVGPWDGEEAITLIPDL-DAGATGAMTGGGYPDGIRKIVDAYFAGDIEKAAELYM 242 Query: 235 KLLPLHNKLFVEPNPVPLKWAMQEMGLIPSGM-RLPLAPLGAAYHDTVRAAL 285 + LPL N + K M E G+I S M R P PL H VR L Sbjct: 243 QWLPLINYENRQCGLSACKALMLEGGVIKSDMLRHPQPPL----HPKVREGL 290 >gi|300312447|ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehydratase [Herbaspirillum seropedicae SmR1] Length = 306 Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 10 VTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELIKVAVEHTAK 69 +T + G + ++W G ++ G TGE ++ E+ ++I+ AV+ Sbjct: 22 LTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSLVPGEYSDIIRTAVDTCRG 81 Query: 70 RIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYNRPTQEGMYLHFKKIAESVDLP 129 ++PIIAG GG ST AI + A+++GA L + Y +Q+G+ H + + +SV Sbjct: 82 KVPIIAGAGG-STRAAIAYAQEAERLGAHGILLMPHYLTEASQDGIAAHVEAVCKSVKFG 140 Query: 130 VILYNVPGRTVADMSNETILRLA-QVKGIVGVKDATGNI 167 VI+YN R V ++ +T+ +LA + ++G KD G I Sbjct: 141 VIIYN---RAVCKLNADTLQKLADRCPNLIGFKDGIGEI 176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 909,691 Number of extensions: 37743 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 4 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)