BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0080.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312578|ref|YP_003776670.1| PHP family metal-dependent phos...   478   e-136
gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida...   111   6e-26
gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril...    72   7e-14

>gi|300312578|ref|YP_003776670.1| PHP family metal-dependent
           phosphoesterase [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  478 bits (1230), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/234 (98%), Positives = 232/234 (99%)

Query: 56  VXRVRAAAQALGMVHVGGVEISVTWAGHTVHIVGLQIDETNPALVQGLAATRNGRERRAR 115
           V R RAAAQALGMVHVGGVEISVTWAGHTVHIVGLQIDETNPALVQGLAATRNGRERRAR
Sbjct: 49  VARARAAAQALGMVHVGGVEISVTWAGHTVHIVGLQIDETNPALVQGLAATRNGRERRAR 108

Query: 116 EIAAQLEQHGVAGAYEGALKHVGNPDLISRTHFARFMVECGRCCDTREVFANYLTEGKPG 175
           EIAAQLEQHGVAGAYEGALKHVGNPDLISRTHFARFMVECGRCCDTREVFANYLTEGKPG
Sbjct: 109 EIAAQLEQHGVAGAYEGALKHVGNPDLISRTHFARFMVECGRCCDTREVFANYLTEGKPG 168

Query: 176 YVPHRWATLEEAVRWIRGAGGVAVIAHPGRYKYSETQFGAFFDEFRQLGGAAIEVNTGSH 235
           YVPHRWATLEEAVRWIRGAGGVAVIAHPGRYKYSETQFGAFFDEFRQLGGAAIEVNTGSH
Sbjct: 169 YVPHRWATLEEAVRWIRGAGGVAVIAHPGRYKYSETQFGAFFDEFRQLGGAAIEVNTGSH 228

Query: 236 TPEQYQQYAQVARYYGFLASMGSDFHGPGESRVDLGGLPPLPQGVKPVWHDWAL 289
           TPEQYQQYAQVAR+YGFLASMGSDFHGPGESRVDLGGLPPLPQGVKPVWHDWAL
Sbjct: 229 TPEQYQQYAQVARHYGFLASMGSDFHGPGESRVDLGGLPPLPQGVKPVWHDWAL 282


>gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine
          deamidase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 52/55 (94%)

Query: 1  MQTVVNKPENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCIVYVVR 55
          MQTVVNKPENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSC+   +R
Sbjct: 1  MQTVVNKPENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLR 55


>gi|300311337|ref|YP_003775429.1| chemotaxis protein
          [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 9  ENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCIVYVVR 55
          E  AS +Y+DR FDC  AKILPGEY++T +DMMIVTVLGSC+   +R
Sbjct: 6  EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIR 52


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 944,550
Number of extensions: 37858
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 3
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)