BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0065.p
         (898 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembl...  1264   0.0  

>gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembly
           FimV protein [Herbaspirillum seropedicae SmR1]
          Length = 896

 Score = 1264 bits (3271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 888/898 (98%), Positives = 889/898 (98%), Gaps = 2/898 (0%)

Query: 1   MPLNTNKKPHLSQIKTLSVAVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSA 60
           MPLNTNKKPHLSQIKTLS AVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSA
Sbjct: 1   MPLNTNKKPHLSQIKTLSAAVALALAVPLGAQAASLGKLTVLSALGQPLRAEIEVTAVSA 60

Query: 61  EEAGKLSAKLAPAEAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLL 120
           EEAGKLSAKLAPAEAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLL
Sbjct: 61  EEAGKLSAKLAPAEAFRRANVDYNPVLGSLSFAVEQRQGRHFIRISSSQPVSDPFVDLLL 120

Query: 121 ELSAGDSRLIREYTFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEP 180
           ELSAGDSRLIREYTFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEP
Sbjct: 121 ELSAGDSRLIREYTFLLDPADSKSPRNAQVAPLTPSNAVGAAAKGEAAAAPAAPAAAAEP 180

Query: 181 APAPAAATQAAAAAAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAP 240
           APAPAAATQAAAAAAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAP
Sbjct: 181 APAPAAATQAAAAAAPAPAAASASTTAAPAAAAPAAPTSSAPIPVSSEEPASNIVQRPAP 240

Query: 241 SALAEELIRRQQAAPDSTPASASPSAAAPAAPVQGATGQAAAAPAGKTGDYRVKPGDTLA 300
           SALAEELIRRQQAAPDSTPASASPSAAAPAAPVQGATGQAAAAPAGKTGDYRVKPGDTLA
Sbjct: 241 SALAEELIRRQQAAPDSTPASASPSAAAPAAPVQGATGQAAAAPAGKTGDYRVKPGDTLA 300

Query: 301 GIAARNQQANVSLDQMLIALYRANPDAFIGNNINRLRAGKILSIPDQPTAAAVDQTEARG 360
           GIAARNQQANVSLDQMLIALYRANPDAF+GNNINRLRAGKILSIPDQPTAAAVDQTEARG
Sbjct: 301 GIAARNQQANVSLDQMLIALYRANPDAFMGNNINRLRAGKILSIPDQPTAAAVDQTEARG 360

Query: 361 MVVAQAQDFNAYRNKLAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSR 420
           MVVAQAQDFNAYRNKLAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSR
Sbjct: 361 MVVAQAQDFNAYRNKLAGQVASAPAGKPGASRQSGGGKITTRVEERSGAQEARDRLELSR 420

Query: 421 ANKGRGKTGNAGAAAAEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQ 480
           ANKGRGKTGNAGAAAAEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQ
Sbjct: 421 ANKGRGKTGNAGAAAAEDKAAAERALAEANDRVKDLEKNVDNLQKLLELKNKTIADLSAQ 480

Query: 481 QKEAKPESPAAAAPAANAEVKPAEGATPAADAPVAAAPAPAPAPAPAPAATPPMAAKPAE 540
           QKEAKPESPAAAAPAANAEVKPAEGATPAADAP AAAPAPAPAPAPA      MAAKPAE
Sbjct: 481 QKEAKPESPAAAAPAANAEVKPAEGATPAADAPAAAAPAPAPAPAPAATPP--MAAKPAE 538

Query: 541 KSGGSFVDKIKENPYVLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVP 600
           KSGGSFVDKIKENPYVLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVP
Sbjct: 539 KSGGSFVDKIKENPYVLAGAGVLVALLAGGGGVLAMRRRKKKDEAAAAEPAVEPEPASVP 598

Query: 601 EPEQVAAAVAAEPEPPVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIAYGRDEQA 660
           EPE VAAAVAAEPEPPVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIAYGRDEQA
Sbjct: 599 EPEPVAAAVAAEPEPPVSAEPAVEAVAEPVAVAETVAEEAPVDPITEADMYIAYGRDEQA 658

Query: 661 EDILKLALQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGL 720
           EDILKLALQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGL
Sbjct: 659 EDILKLALQTQPERQALHAKLLEIYAKRNDVAAFNRVALNLHALSGGLNETWVKAAALGL 718

Query: 721 EIDPTNPLYGGQPEPEPEPEPEEAGMEFDLDDFKSAEIRADATPAPAPMDLGKDIDFDLD 780
           EIDPTNPLYGGQPEPEPEPEPEEAGMEFDLDDFKSAEIRADATPAPAPMDLGKDIDFDLD
Sbjct: 719 EIDPTNPLYGGQPEPEPEPEPEEAGMEFDLDDFKSAEIRADATPAPAPMDLGKDIDFDLD 778

Query: 781 LENGAKPDADEPLLPASTAAASASTLLDSLDDQPQASSLSDLDLSLPDEASAPPSATNLL 840
           LENGAKPDADEPLLPASTAAASASTLLDSLDDQPQASSLSDLDLSLPDEASAPPSATNLL
Sbjct: 779 LENGAKPDADEPLLPASTAAASASTLLDSLDDQPQASSLSDLDLSLPDEASAPPSATNLL 838

Query: 841 EEDEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMMAGLG 898
           EEDEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMMAGLG
Sbjct: 839 EEDEESAFEAEMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQVARAKQMMAGLG 896


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.124    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,663,865
Number of extensions: 55800
Number of successful extensions: 335
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 5
Length of query: 898
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 804
Effective length of database: 1,174,780
Effective search space: 944523120
Effective search space used: 944523120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 135 (56.6 bits)