BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0059.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312597|ref|YP_003776689.1| Zn-dependent protease with chap...   558   e-160
gi|300309997|ref|YP_003774089.1| Zn-dependent protease [Herbaspi...    96   4e-21
gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...    69   4e-13

>gi|300312597|ref|YP_003776689.1| Zn-dependent protease with
           chaperone function protein [Herbaspirillum seropedicae
           SmR1]
          Length = 273

 Score =  558 bits (1438), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MVLKPIIKNSLLALALAGLVACETVQTTQGGAVGIDRKQQMLVSSAEMDAASSKEYAQVL 60
           MVLKPIIKNSLLALALAGLVACETVQTTQGGAVGIDRKQQMLVSSAEMDAASSKEYAQVL
Sbjct: 1   MVLKPIIKNSLLALALAGLVACETVQTTQGGAVGIDRKQQMLVSSAEMDAASSKEYAQVL 60

Query: 61  AEAKSKGLLNRNAAQVQRVRNIASRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGG 120
           AEAKSKGLLNRNAAQVQRVRNIASRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGG
Sbjct: 61  AEAKSKGLLNRNAAQVQRVRNIASRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGG 120

Query: 121 KIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD 180
           KIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD
Sbjct: 121 KIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD 180

Query: 181 VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGEEPM 240
           VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGEEPM
Sbjct: 181 VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGEEPM 240

Query: 241 KFMSTHPSSSERIADLTVYAQRVEPLYQQTRRR 273
           KFMSTHPSSSERIADLTVYAQRVEPLYQQTRRR
Sbjct: 241 KFMSTHPSSSERIADLTVYAQRVEPLYQQTRRR 273


>gi|300309997|ref|YP_003774089.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 101/194 (52%), Gaps = 22/194 (11%)

Query: 100 WNWEVNVLSSDETNAWCMPGGKIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERA 159
           ++++  ++     NA+ +PGG I V +GL+   + S+ ELA VM HEI H  + H     
Sbjct: 145 FDFQFFMVRDPMLNAFALPGGFIGVNSGLVLAAQ-SESELAGVMSHEIGHVAQRHIARML 203

Query: 160 SQQVVANSAISIGAALLG-LGDVGKQGGQYLYMGLMG---------LPNSRANETEADRI 209
            QQ   NS I + A +LG L  V K GG      +MG         L  SR  E EADRI
Sbjct: 204 GQQK-QNSMIQLAAIVLGALAGVSKAGGDAAMATMMGGTGLAVQRQLNFSRDAEREADRI 262

Query: 210 GVELAARGGYDPKAAVTLWQKM--ASLGGEEPM-KFMSTHPSSSERIADLTV------YA 260
           G+++   GG+DP   VT + ++  AS    + +  ++ THP ++ERIAD+        Y 
Sbjct: 263 GLQIMRDGGFDPSGMVTFFGRLQAASRNYSDAVPPYLMTHPLTTERIADIEARIRDQRYK 322

Query: 261 QRVE-PLYQQTRRR 273
           QRV+ P +Q  R R
Sbjct: 323 QRVDNPEFQLVRAR 336


>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 45  SAEMDAASSKEYAQVLAEAKSKGLLNRNAAQVQRVRNIASRLIPQTGVFRPDALKWNWEV 104
           +A +  A  ++  Q   E   + +L  +    +R + I +R    T    PDA  +   V
Sbjct: 122 AATLPVAVDRQIGQGTLEFLDQHVLAPSQLDARRTQAITARFRALTAPL-PDAPDYQI-V 179

Query: 105 NVLSSDETNAWCMPGGKIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERASQQVV 164
              S    NA+ +P G+I V T  I +L   DD L  V+ HE+ H  R H   R    ++
Sbjct: 180 FRKSRIGPNAFALPSGQIVV-TDEIVRLLDDDDALMGVLAHELGHVHRRHLMRR----LI 234

Query: 165 ANSAISIGAALLGLGDVGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAA 224
            +SAI+  A +L  GDV       +   L+ L  SR  E EAD   + +    G   +  
Sbjct: 235 QSSAIAATATVL-FGDVSAVLAN-IPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKL 292

Query: 225 VTLWQKMASLGGEEPMK-FMSTHPSSSERIADL 256
             +++K+ S G ++P   ++S+HP++ ERIA +
Sbjct: 293 ALVFEKLESAGKDDPASPYLSSHPANDERIAHI 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 661,944
Number of extensions: 22243
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)