BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0044.p
         (547 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [...  1055   0.0  

>gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score = 1055 bits (2728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/547 (100%), Positives = 547/547 (100%)

Query: 1   MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV 60
           MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV
Sbjct: 1   MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV 60

Query: 61  VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG 120
           VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG
Sbjct: 61  VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG 120

Query: 121 FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL 180
           FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL
Sbjct: 121 FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL 180

Query: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT 240
           ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT
Sbjct: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT 240

Query: 241 VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI 300
           VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI
Sbjct: 241 VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI 300

Query: 301 LLRLWWSEAGQGMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALRSGGLPRLQAA 360
           LLRLWWSEAGQGMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALRSGGLPRLQAA
Sbjct: 301 LLRLWWSEAGQGMGFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALRSGGLPRLQAA 360

Query: 361 LLRLTARLAGMGYAIPGSVIAVGILLPVAWLQSLWPGAGLGVLLTASSLGVIYAYLVRFT 420
           LLRLTARLAGMGYAIPGSVIAVGILLPVAWLQSLWPGAGLGVLLTASSLGVIYAYLVRFT
Sbjct: 361 LLRLTARLAGMGYAIPGSVIAVGILLPVAWLQSLWPGAGLGVLLTASSLGVIYAYLVRFT 420

Query: 421 AVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLLWRSLAVAALMVFVDVVKEL 480
           AVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLLWRSLAVAALMVFVDVVKEL
Sbjct: 421 AVAVQSVESGYTRIPASLDEAARSLGSSRAVIAWRVHMPLLWRSLAVAALMVFVDVVKEL 480

Query: 481 PATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRALDGKRSQPL 540
           PATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRALDGKRSQPL
Sbjct: 481 PATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRALDGKRSQPL 540

Query: 541 QNAAPPA 547
           QNAAPPA
Sbjct: 541 QNAAPPA 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,497,465
Number of extensions: 53715
Number of successful extensions: 370
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 5
Length of query: 547
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,193,720
Effective search space: 545530040
Effective search space used: 545530040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)