BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0043.p (437 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC trans... 796 0.0 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 208 6e-55 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 204 1e-53 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 203 2e-53 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 191 8e-50 >gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 434 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/437 (98%), Positives = 432/437 (98%), Gaps = 3/437 (0%) Query: 1 MRYTAQTPSQTRIVTISLSMPMFLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPS 60 MRYTAQTPSQTRIVTISLSMPMFLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPS Sbjct: 1 MRYTAQTPSQTRIVTISLSMPMFLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPS 60 Query: 61 GSGKTSLLRAVAGLEPAQAGLIRLDGQLLEGGGLRVPAEQRRIGMVFQDFALFPHLNVAD 120 GSGKTSLLRAVAGLEPAQAGLIRLDGQLLEGGG+RVPAEQRRIGMVFQDFALFPHLNVAD Sbjct: 61 GSGKTSLLRAVAGLEPAQAGLIRLDGQLLEGGGVRVPAEQRRIGMVFQDFALFPHLNVAD 120 Query: 121 NIAFGLRGRDKRERSAIVAGMLALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLL 180 NIAFGLRGRDKRERSAIVAGMLALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLL Sbjct: 121 NIAFGLRGRDKRERSAIVAGMLALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLL 180 Query: 181 LDEPFSSLDVELRERLAHDVRDILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWD 240 LDEPFSSLDVELRERLAHDVRDILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWD Sbjct: 181 LDEPFSSLDVELRERLAHDVRDILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWD 240 Query: 241 TPYALYHRPATRFAADFIGHGVLLQGQLRGPDANAQALASRPATGHHQGDEQEEIEVETA 300 TPYALYHRPATRFAADFIGHGVLLQGQLRGPDANAQALASRPAT HHQGDEQEEIEVETA Sbjct: 241 TPYALYHRPATRFAADFIGHGVLLQGQLRGPDANAQALASRPATDHHQGDEQEEIEVETA 300 Query: 301 AGLLRGVPLHALHALHGQQAAQTSEVDVLLRADDVIHDDASPFRARVVRKSFRGAEFLYT 360 AGLLRGVP LHALHGQQAAQTSEVDVLLRADDVIHDDASPFRARVVRKSFRGAEFLYT Sbjct: 301 AGLLRGVP---LHALHGQQAAQTSEVDVLLRADDVIHDDASPFRARVVRKSFRGAEFLYT 357 Query: 361 LALENGQTLLSLAPSHHDHAVGEWIGIRLEVTHLVTFARTESASAGLAVAAVAPAAPVAL 420 LALENGQTLLSLAPSHHDHAVGEWIGIRLEVTHLVTFARTESASAGLAVAAVAPAAPVAL Sbjct: 358 LALENGQTLLSLAPSHHDHAVGEWIGIRLEVTHLVTFARTESASAGLAVAAVAPAAPVAL 417 Query: 421 APMAADAADLAHEASRR 437 APMAADA +LAHEASRR Sbjct: 418 APMAADATELAHEASRR 434 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 208 bits (530), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 109/225 (48%), Positives = 156/225 (69%), Gaps = 4/225 (1%) Query: 39 PAVDAVSLRLAPGELGALIGPSGSGKTSLLRAVAGLEPAQAGLIRLDGQLLEGG--GLRV 96 P + VS+ L GE+ AL+GPSGSGKT+LLRAVAGLE +AG I + + + G + Sbjct: 21 PILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEM 80 Query: 97 PAEQRRIGMVFQDFALFPHLNVADNIAFGLRGRD--KRERSAIVAGMLALVGLPEAGAKF 154 PAE+R +G+VFQ +AL+PH VADN+A+GL+ R E + V +L+ +GL G ++ Sbjct: 81 PAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGERY 140 Query: 155 PHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKRTHTTALMV 214 PHQLSGGQQQR+A+ARAL P+++LLDEP S+LD +LRE +R+++ R +ALMV Sbjct: 141 PHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMV 200 Query: 215 THDQMEAFAVADVVGVMRQGQLEQWDTPYALYHRPATRFAADFIG 259 THDQ EA A++D + ++ G++EQ TP ++Y P T F A+F+G Sbjct: 201 THDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMG 245 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/253 (46%), Positives = 162/253 (64%), Gaps = 12/253 (4%) Query: 22 MFLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPSGSGKTSLLRAVAGLEPAQAGL 81 M +EV H+ R+ A++ VSL GEL AL+GPSG GKT+LLR +AGLE +G Sbjct: 1 MSIEVHHIQKRF--GSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQ 58 Query: 82 IRLDGQLLEGGGLRVPAEQRRIGMVFQDFALFPHLNVADNIAFGLRGRDKRERSA----- 136 + LDG+ +R +R++G VFQ +ALF H+ V +NIAFGLR + + +R + Sbjct: 59 VLLDGEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIR 114 Query: 137 -IVAGMLALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRER 195 V +L LV L ++P QLSGGQ+QRIALARALA +PR+LLLDEPF +LD ++R+ Sbjct: 115 EKVKRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 196 LAHDVRDILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWDTPYALYHRPATRFAA 255 L +R + H T++ VTHDQ EA VAD V +M +GQ+EQ TP A+Y+ PA+ F Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVY 234 Query: 256 DFIGHGVLLQGQL 268 F+G+ L G+L Sbjct: 235 GFLGNVNLFHGRL 247 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/243 (48%), Positives = 164/243 (67%), Gaps = 6/243 (2%) Query: 22 MFLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPSGSGKTSLLRAVAGLEPAQAGL 81 +FL V + R+ A+D VSL + GE+ L+GPSG GKT+LLR +AGLE +G Sbjct: 11 VFLSVREVEKRF--GSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGR 68 Query: 82 IRLDGQLLEGGGLRVPAEQRRIGMVFQDFALFPHLNVADNIAFGLRGRDKRERSAIVAGM 141 + DG+ + ++P + R G++FQ +ALFP+L+VADN+A+GL ++++ V M Sbjct: 69 LHADGRDIS----QLPPQARDYGILFQSYALFPNLSVADNVAYGLGRMSRQQKRERVTEM 124 Query: 142 LALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVR 201 L++VGL + K+P QLSGGQQQR+ALARALAP P LLLLDEP S+LD ++RE L ++R Sbjct: 125 LSMVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIR 184 Query: 202 DILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWDTPYALYHRPATRFAADFIGHG 261 + K+ T LMVTHDQ EA +AD + VM+ G++EQ+ TP +Y RPAT F ADFIG Sbjct: 185 RLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQA 244 Query: 262 VLL 264 L Sbjct: 245 NWL 247 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 191 bits (486), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 104/230 (45%), Positives = 142/230 (61%), Gaps = 6/230 (2%) Query: 41 VDAVSLRLAPGELGALIGPSGSGKTSLLRAVAGLEPAQAGLIRLDGQLLEGGGLRVPAEQ 100 V + L + GE L+GPSGSGKT+ L +AG E G IRLDGQLL RVP + Sbjct: 38 VKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLN----RVPPHK 93 Query: 101 RRIGMVFQDFALFPHLNVADNIAFGL--RGRDKRERSAIVAGMLALVGLPEAGAKFPHQL 158 R IGMVFQ++ALFPH+ +A N+A+ L R D+ R A V L +V + + G ++P QL Sbjct: 94 RNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQL 153 Query: 159 SGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDILKRTHTTALMVTHDQ 218 SGGQQQR+ALAR L P+L+L+DEP +LD +LRE + +++ + KR T + VTHDQ Sbjct: 154 SGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQ 213 Query: 219 MEAFAVADVVGVMRQGQLEQWDTPYALYHRPATRFAADFIGHGVLLQGQL 268 EA ++D V V QG ++Q LY P +F A+FIG +G + Sbjct: 214 SEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSV 263 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,243,060 Number of extensions: 53877 Number of successful extensions: 622 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 394 Number of HSP's successfully gapped: 147 Length of query: 437 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 349 Effective length of database: 1,203,190 Effective search space: 419913310 Effective search space used: 419913310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)