BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0039.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312613|ref|YP_003776705.1| transcription regulator protein... 476 e-136 gi|300310702|ref|YP_003774794.1| transcription regulator protein... 95 4e-21 gi|300313340|ref|YP_003777432.1| transcription regulator protein... 82 4e-17 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 81 9e-17 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 79 3e-16 >gi|300312613|ref|YP_003776705.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 476 bits (1226), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL Sbjct: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE Sbjct: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 Query: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS 180 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS Sbjct: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS 180 Query: 181 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD 239 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD Sbjct: 181 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD 239 >gi|300310702|ref|YP_003774794.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 4/233 (1%) Query: 4 DPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGL 63 + I ++ + ++V +RL+ I G QLP ER+L GVGRPAVREA++ + G Sbjct: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 Query: 64 LRIRQGEGTFVSSLETRELLEPL----EMIIDLNPGTLESLFDARLIIETGVAALAATHI 119 + I GE V L+ + + ++ P L+ L +AR+ +ET A +AA Sbjct: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 Query: 120 EDAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSR 179 +++RL + V + D F D+ FH I + NP SI SL+ + Sbjct: 123 TPEQIERLRQTVTVHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 Query: 180 SITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRN 232 + R P E +L +H +I+DA+ A D A+EAMR HL+R + YR G+ Sbjct: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ 235 >gi|300313340|ref|YP_003777432.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 6/223 (2%) Query: 8 QKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIR 67 Q IS+Q+A ++ I L+P Q LP E EL + GV RP VREA LA GL+ + Sbjct: 14 QVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVS 73 Query: 68 QGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDAELDRL 127 G+ V L + + T + + R ++ A LAA H A++DRL Sbjct: 74 SGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRL 133 Query: 128 ARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQS-IAGSLYMLGKKSRSITS--R 184 V L + AF+ D FHEA+ +A NP L + I+G +L +RS+ S R Sbjct: 134 NAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHTR 193 Query: 185 IPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYR 227 + L +H+ I A+ + AS A R + DAY+ Sbjct: 194 NQQEWDSVLLNHQNIAAAIINGN---ASAARRLVDIHYVDAYK 233 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 80.9 bits (198), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 107/234 (45%), Gaps = 21/234 (8%) Query: 9 KSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQ 68 +S+S++V L MI +G L P +LP E E+ GV R VREAI L GL+ R Sbjct: 18 QSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Query: 69 GEGTFVSSLETRELLEPLEMIIDLNPGTLES------LFDARLIIETGVAALAATHIEDA 122 G GTFV LE ++ I+++P T+ + L + R+ +ET A LAA + Sbjct: 78 GIGTFV--LEAKKGGN-----INIDPATITTMRDLLALLELRISLETETAGLAAARRTEE 130 Query: 123 ELDRLARNVEDEARLLSDPAA-FAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRSI 181 +L + R D R D FH AI A N + I L M + I Sbjct: 131 QLQEI-REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRI 189 Query: 182 TS------RIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSA 229 + + + L+R ++H I +A+ D + A AMR+HL R+ R A Sbjct: 190 NTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRA 243 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 19/228 (8%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 M + I + + Q++ +L +I G +LP ER+LA LGV RP++REA+ L + Sbjct: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNP--GTLESLFDARLIIETGVAALAATH 118 G + +R G G +V RE IDL+ G LE L AR +IE VA AA H Sbjct: 61 EGHIEVRMGSGIYVCPPVQRERR------IDLSSEEGPLE-LIRAREMIEGEVAYAAAQH 113 Query: 119 IEDAELDRLARNVEDEARLLSDPAAFA---AADVEFHEAIIEACNNPFLQSIAGSLY--M 173 ++A E A ++S+ A AD FH + EA N L + L+ Sbjct: 114 ---GSKQQIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDAR 170 Query: 174 LGKKSRSITSRIPAT--LERSLQDHRQILDALKARDPQKASEAMRHHL 219 LG + + S T + ++ +H +++AL+ R+P++A AMR H+ Sbjct: 171 LGPLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHM 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 661,394 Number of extensions: 24525 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 16 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)