BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0037.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312614|ref|YP_003776706.1| LysR family transcription regul... 602 e-174 gi|300311165|ref|YP_003775257.1| transcription regulator protein... 163 2e-41 gi|300313217|ref|YP_003777309.1| LysR family transcription regul... 100 3e-22 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 89 6e-19 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 77 1e-15 >gi|300312614|ref|YP_003776706.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 602 bits (1553), Expect = e-174, Method: Compositional matrix adjust. Identities = 300/301 (99%), Positives = 300/301 (99%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA Sbjct: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYPDFA 120 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYPDFA Sbjct: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYPDFA 120 Query: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL Sbjct: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHTL 180 Query: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVANPRIHAISSISAMVQLVEGGFGVATLPRA 240 EELAAHDLITFQRGSQPHQGLLQLCQEWGVANPRIHAISSISAMVQLVEGGFGVATLPRA Sbjct: 181 EELAAHDLITFQRGSQPHQGLLQLCQEWGVANPRIHAISSISAMVQLVEGGFGVATLPRA 240 Query: 241 SVRQLTRRLPLRILRCQAQLPALQIHASYREDPSSSLAELVLDSALEHARRAQRKGRTAE 300 SVRQLTRRLPLRILRCQAQLPALQIHASYREDPSSSLAELVLDSALEHARRAQ KGRTAE Sbjct: 241 SVRQLTRRLPLRILRCQAQLPALQIHASYREDPSSSLAELVLDSALEHARRAQIKGRTAE 300 Query: 301 K 301 K Sbjct: 301 K 301 >gi|300311165|ref|YP_003775257.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 160/292 (54%), Gaps = 3/292 (1%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MN+RF+E F W A L++ AE+LH TQ+ +SSRIASLE++ GV L DR ++ LT Sbjct: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYPDFA 120 G + A +++ + R++++++ +RIG IES+VHSW P +L + +P Sbjct: 61 GSKALVHAERMVKLMREMKEDMSDREVYAGVIRIGVIESIVHSWFPDFLGRLHKTFPRLQ 120 Query: 121 LELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGH-RERFGTRSHT 179 +E+ +T+ L EQ +G DLV + V + + M +VG + G+ + + Sbjct: 121 IEIVSDTTIHLHEQFSKGNLDLVLQAEAVIGPQVSNLALCEFPMRWVGSPKLDIGSETLS 180 Query: 180 LEELAAHDLITFQRGSQPHQGLLQLCQEWGVANPRIH--AISSISAMVQLVEGGFGVATL 237 L +LAA +I+F R S PH + +L + + +H I+S++ M++L GFG+ + Sbjct: 181 LADLAAFPIISFARNSGPHAVIERLFSDSQRSERTLHINCIASVATMIRLATDGFGITAV 240 Query: 238 PRASVRQLTRRLPLRILRCQAQLPALQIHASYREDPSSSLAELVLDSALEHA 289 P A +++ L +LR + PAL + AS+R D + L E V A E A Sbjct: 241 PPAIIQRELNEESLHLLRVDTEFPALVLIASFRSDHENPLTETVARIAQETA 292 >gi|300313217|ref|YP_003777309.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 296 Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 15/249 (6%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M L +E F + +TRAAE+L+ QS +++RI LE+ +GV L R ++ LT A Sbjct: 10 MELAELEIFRTVVAEGGVTRAAERLNRVQSNVTTRIKQLEQSMGVPLFVRDRRRMVLTAA 69 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLA-LRIGSIESVVHSWLPAWLQEIRCRYPDF 119 G+ A ++LD+ ++ RQ + S P LRIGS+ES S LP L E R+P+ Sbjct: 70 GEALLDYAERILDLAQEARQAVAPQS--PRGRLRIGSMESAAASRLPGPLAEFHQRWPEV 127 Query: 120 ALELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMTPMEMVFVGHRERFGTRSHT 179 LEL+ + VL Q+R D + SD A + + E++ V R R+ Sbjct: 128 RLELSTAPTDVLMAQVRACKLDAALVAGPVSDPAFDATPLFREELLLVTPRSHRRVRAP- 186 Query: 180 LEELAAHDLITFQRGSQPHQGLLQLCQEW------GVANPRIHAISSISAMVQLVEGGFG 233 EE+ LI F++G + + W G PR ++S A++ V G G Sbjct: 187 -EEVMLDTLIVFEQGC----AYRRHAEAWFAGHGAGRQLPRTLELASYHAILACVSAGAG 241 Query: 234 VATLPRASV 242 VA +PR+ + Sbjct: 242 VAVVPRSVI 250 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 88.6 bits (218), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 21/256 (8%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M++R ++ F A+ ++ TRA+E+LHI Q +S +I LEEELGV LL R + RLT A Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GQRFQRLAVKLLDMQRQIR---QELGGHSAGPLALRIGSIESVVHSWLPAWLQEIRCRYP 117 G+ F A+++L+ Q++ Q++G + L+ IG + S ++ LP ++++R YP Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLS--IGFVASTLYGGLPMLVRKLRQHYP 118 Query: 118 DFALELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAV--------RSRLMTPMEMVFVGH 169 + ++L TS ++ G D+ F +D V + L P G Sbjct: 119 EVDIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGS 178 Query: 170 RERFGTRSHTLEELAAHDLITFQRGSQPH--QGLLQLCQEWGVANPRIHAISSISAMVQL 227 +R +L+E+ LI + + +P +L L + + +H + I + L Sbjct: 179 NQRV-----SLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGL 233 Query: 228 VEGGFGVATLPRASVR 243 V G+ +P AS R Sbjct: 234 VAAESGICLIP-ASAR 248 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/253 (28%), Positives = 115/253 (45%), Gaps = 8/253 (3%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M LR ++ F+ AS S +RAAE LHI Q +S +I LEE LGV L+DR + LT+A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGHSAGPLA-LRIGSIESVVHSWLPAWLQEIRCRYPDF 119 G+ F +++L QI + + G IG + S ++ LP ++ R P+ Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 120 ALELTVETSPVLTEQIRRGAQDLVFTSTVGSDTAVRSRLMT--PMEMVF-VGHRERFGTR 176 + + + E ++ G D+ F SD + + P+ VF +GH Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGH-PLLARN 179 Query: 177 SHTLEELAAHDLITFQRGSQPHQG--LLQLCQEWGVANPRIHAISSISAMVQLVEGGFGV 234 TL +LAA I + +P +L + + + + + + LV G GV Sbjct: 180 KVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGV 239 Query: 235 ATLPRASVRQLTR 247 +PR SV+ L R Sbjct: 240 TLVPR-SVQGLHR 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 874,579 Number of extensions: 34425 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 43 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)