BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0031.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312619|ref|YP_003776711.1| ABC transporter permease [Herba... 469 e-134 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 89 4e-19 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 82 5e-17 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 82 5e-17 gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 78 7e-16 >gi|300312619|ref|YP_003776711.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 257 Score = 469 bits (1208), Expect = e-134, Method: Compositional matrix adjust. Identities = 241/242 (99%), Positives = 241/242 (99%) Query: 1 MVLAIVFILLMWQIAAWSLPSFLMPGVPSVAARLWEEVQSSNFRAALFGSLYRLGMGYGS 60 MVLAIVFILLMWQIAAWSLPSFLMPGVPSVAARLWEEVQSSNFR ALFGSLYRLGMGYGS Sbjct: 16 MVLAIVFILLMWQIAAWSLPSFLMPGVPSVAARLWEEVQSSNFRLALFGSLYRLGMGYGS 75 Query: 61 ALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAA 120 ALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAA Sbjct: 76 ALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAA 135 Query: 121 FFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRA 180 FFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRA Sbjct: 136 FFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRA 195 Query: 181 LISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALIDQVILENLKHRLLKYQ 240 LISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALIDQVILENLKHRLLKYQ Sbjct: 196 LISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALIDQVILENLKHRLLKYQ 255 Query: 241 YV 242 YV Sbjct: 256 YV 257 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 1/238 (0%) Query: 2 VLAIVFILLMWQIAAWSLPSFLMPGVPSVAARLWEEVQSSNFRAALFGSLYRLGMGYGSA 61 V+AIV L++WQ+ + + +P V A E + + ++ S R+ G+G+ Sbjct: 19 VIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAG 78 Query: 62 LVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAAF 121 +V+G+ G+ R++L I + IP IA+V L +I +G G L + ++ Sbjct: 79 VVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTV 138 Query: 122 FPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRAL 181 F L+ + ++V + + AA +GA + +L V LP+ +P ++TGA++A GN++ + Sbjct: 139 FIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTV 198 Query: 182 ISAEMLVGFGKGLGRTLAYSGETADMVGVMANILTIAILAALIDQVILENLKHRLLKY 239 +SAE +V +GLG + + + V I+ + IL L D+V+ + L +Y Sbjct: 199 VSAE-IVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRKLLARY 255 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 81.6 bits (200), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 85 AIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAAFFPAALSVMNATESVQQVHVSAAR 144 + +++ IP IA++PL ++ G GN P + ++++ AFFP ++ + V +++ AAR Sbjct: 115 TVQVIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAAR 174 Query: 145 VMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRALISAEMLVGFGKGLGRTLAYSGET 204 +GAS+ ++ RV LPA +P +++G ++ G A+ +I AEM + GLG + + E Sbjct: 175 NLGASQSTLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEM-IAVSNGLGFRIMEAREY 233 Query: 205 ADMVGVMANILTIAILAALIDQVILENLKHRLLKYQ 240 ++A ++TI +L ID + + L + +L++ Sbjct: 234 FWSDKIIAGMITIGLLGLAID-LGMSRLNNYMLRWH 268 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 81.6 bits (200), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 5/189 (2%) Query: 19 LPSFLMPGVPSVAARLWEEVQSSNFRAALFGSLYRLGMGY--GSALVLGIGFGLVGAVLF 76 +P+ L+P +A LW Q + SL R+ G+ GSAL + +G LVG + Sbjct: 48 IPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGL-LVG-ISR 105 Query: 77 FFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAAFFPAALSVMNATESVQ 136 +L+ + L++IPS+AW+PL L+ +G P VV++AI AFFP L+++ + Sbjct: 106 RAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDID 165 Query: 137 QVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRALISAEMLVGFGKGLGR 196 + G + +++ + LPA +P L G + AW L++AE L+ KG+G Sbjct: 166 HKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAE-LIAATKGVGY 224 Query: 197 TLAYSGETA 205 L+ E++ Sbjct: 225 LLSDGRESS 233 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 77.8 bits (190), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 82/146 (56%), Gaps = 1/146 (0%) Query: 50 SLYRLGMGYGSALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGN 109 SL R+G G+G A ++GI G + F + I +L+ + +AW+P+ L++ N Sbjct: 116 SLQRVGTGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSAN 175 Query: 110 LPIVVVVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITG 169 + + I + +P ++ + V Q +++ ARV+ S +L ++ P+V+P ++TG Sbjct: 176 PAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTG 235 Query: 170 AQLAFGNAWRALISAEMLVGFGKGLG 195 +L+ G AW +++AEML G G G+G Sbjct: 236 VRLSIGTAWLVIVAAEMLTG-GVGIG 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 607,759 Number of extensions: 19891 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 14 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)