BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0030.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro...   671   0.0  
gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A...    68   1e-12
gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla...    61   2e-10

>gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MKLARILAPAITAAALAFSGNAFALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELI 60
           MKLARILAPAITAAALAFSGNAFALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELI
Sbjct: 1   MKLARILAPAITAAALAFSGNAFALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELI 60

Query: 61  EFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINK 120
           EFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINK
Sbjct: 61  EFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINK 120

Query: 121 VADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAF 180
           VADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAF
Sbjct: 121 VADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAF 180

Query: 181 LFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKREAVWKSLDAQRDAITLL 240
           LFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKREAVWKSLDAQRDAITLL
Sbjct: 181 LFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKREAVWKSLDAQRDAITLL 240

Query: 241 QKKPAEASKLIAGYFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIA 300
           QKKPAEASKLIAGYFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIA
Sbjct: 241 QKKPAEASKLIAGYFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIA 300

Query: 301 DILQSQGSLKTRDGKPFDVNSITDLSWQNARKL 333
           DILQSQGSLKTRDGKPFDVNSITDLSWQNARKL
Sbjct: 301 DILQSQGSLKTRDGKPFDVNSITDLSWQNARKL 333


>gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 15/207 (7%)

Query: 52  KYGLDVELIEFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALV 111
           K G+ V+   F  G D+++ I+ G+LD G      A++  + GA + VV G   G   LV
Sbjct: 49  KCGIKVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLV 108

Query: 112 AREDSGINKVADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSL 171
           A +DSGI  V DLKGK +     G     VL    L   G+ A DV ++ ++     Q+L
Sbjct: 109 AGKDSGIKSVKDLKGKKVGVTRGG--IHEVLLDAELGQNGLSAKDVTIVYLAFADLNQAL 166

Query: 172 VGKRVDAAFLFEPQARIA-------QLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKRE 224
           +GK +DA    EPQ+  A       +++ P      IGE  P+  MV+  + +   +KR 
Sbjct: 167 LGKNIDAMMQSEPQSSQAINKGFGVEVMKPYDT--PIGE--PYRTMVM--TEKFYNEKRP 220

Query: 225 AVWKSLDAQRDAITLLQKKPAEASKLI 251
              K +    +A      KP  A K +
Sbjct: 221 LAEKFMRCFLEATKTFIDKPEVAEKYV 247


>gi|300311646|ref|YP_003775738.1| taurine ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 51  KKYGLDVELIEFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGY--H 108
           K  G  ++  +F SG D++ AI GG +  G  G S   A AS+G D+K    A +     
Sbjct: 51  KATGKKIDFRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDE 110

Query: 109 ALVAREDSGINKVADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAV 168
           ALV R  +GIN VADLKGK LA+    +    +L   +++  G    DV V  +     V
Sbjct: 111 ALVVRNGAGINSVADLKGKKLAAAPVSTDHYQLL--ALIKSQGWTEKDVKVFAIPQPDIV 168

Query: 169 QSLVGKRVDAAFLFEP 184
            +     +D  F+++P
Sbjct: 169 AAYNRGDIDGGFVWDP 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 929,841
Number of extensions: 38022
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)