BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0029.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 528 e-151 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 186 2e-48 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 186 2e-48 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 183 1e-47 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 182 2e-47 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 528 bits (1361), Expect = e-151, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLK 120 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLK Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLK 120 Query: 121 GFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQG 180 GFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQG Sbjct: 121 GFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQG 180 Query: 181 PTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAIRRDILCLLG 240 PTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAIRRDILCLLG Sbjct: 181 PTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAAIRRDILCLLG 240 Query: 241 IHAEQDEFAKNIEGVGV 257 IHAEQDEFAKNIEGVGV Sbjct: 241 IHAEQDEFAKNIEGVGV 257 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 139/220 (63%), Gaps = 3/220 (1%) Query: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMF 77 +++ +I G+ V L+GPSGCGKSTLL+ AG PSSG + D + + P P+R ++F Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 78 QENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQR 137 QE AL+PW+T++QNVA LE + K + ++ L+ + L F +P +SGGMRQR Sbjct: 89 QEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQR 148 Query: 138 AALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLA 197 A+AR +L+DEPFGALDALTR LQD L + + T+V VTH ++EA++LA Sbjct: 149 VAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLA 208 Query: 198 DRIFVFSPRPAKVLKEFNLVHHEKTHDLS--EFAAIRRDI 235 DRI V + RP V ++ LV+ + D + EF A++R++ Sbjct: 209 DRIVVMTYRPGTVKRDM-LVNLPRLRDPADPEFNALKREL 247 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 94/204 (46%), Positives = 132/204 (64%), Gaps = 3/204 (1%) Query: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 G H + E +A GE V L+G SGCGKSTLL++ AGL KPS G + + I GP PE Sbjct: 25 GVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPE 84 Query: 73 RTLMFQENALYPWLTLQQNVALALE--FQSVDKK-KAAEQARVWLENVKLKGFEHYYPHQ 129 R ++FQ ++L PWL+ +N+ L +E F + + + + ++ R L V L E+ P++ Sbjct: 85 RAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNE 144 Query: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHD 189 +SGGM+QR +ARA +PK LL+DEPFGALDALTR LQD L ++ + TVV+VTHD Sbjct: 145 ISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHD 204 Query: 190 VDEALFLADRIFVFSPRPAKVLKE 213 VDEA+ L+DRI + + PA + E Sbjct: 205 VDEAVLLSDRIVMMTNGPAATIGE 228 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 128/200 (64%) Query: 15 LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERT 74 +H ++ + +I +G V +G SGCGKSTLL+ AG S G ++ DGQ + GP ER Sbjct: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERG 78 Query: 75 LMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGM 134 ++FQ+++L PW ++Q NVAL L+F V K + E+A+ L V L+ F P+++SGGM Sbjct: 79 VVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGM 138 Query: 135 RQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEAL 194 RQR LARA PK LL+DEPFGALD++TR +Q+ L + + G V +TH ++EAL Sbjct: 139 RQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEAL 198 Query: 195 FLADRIFVFSPRPAKVLKEF 214 FL + V SPRP +++ F Sbjct: 199 FLGTEVIVMSPRPGRIVARF 218 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 97/201 (48%), Positives = 129/201 (64%), Gaps = 7/201 (3%) Query: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMF 77 +E+ + +GE +A+VGPSGCGKST + +A GL++P+ GSV DGQT+ GP + F Sbjct: 23 VEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDGQTVTGPLKFVGMAF 82 Query: 78 QENALYPWLTLQQNVALALEF-----QSVDKKKA--AEQARVWLENVKLKGFEHYYPHQV 130 Q L PW T NV L LE + +KKA E+A L+ V L G+ +P Q+ Sbjct: 83 QAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTERALSLLKTVGLDGYADKFPWQL 142 Query: 131 SGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDV 190 SGGM+QRA++ RA I +PK LLLDEPFGALDA TR L LRDL ++ V+LVTHD+ Sbjct: 143 SGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVTHDL 202 Query: 191 DEALFLADRIFVFSPRPAKVL 211 EA FLAD I+V S RP +++ Sbjct: 203 REAAFLADTIYVMSKRPGRIV 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 801,642 Number of extensions: 32269 Number of successful extensions: 502 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 140 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)