BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0026.p (400 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferas... 820 0.0 gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas... 168 6e-43 gi|300312816|ref|YP_003776908.1| aminotransferase class III prot... 144 2e-35 gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas... 140 2e-34 gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-ox... 129 3e-31 >gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/400 (100%), Positives = 400/400 (100%) Query: 1 MQYSQSDANKLMYVTNRPELVFTEGHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADA 60 MQYSQSDANKLMYVTNRPELVFTEGHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADA Sbjct: 1 MQYSQSDANKLMYVTNRPELVFTEGHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADA 60 Query: 61 LAAQSKKLINPSPAFYNEPSIELAKLLTANSVFDRVFFANSGGEANEGAIKLARKWGKKN 120 LAAQSKKLINPSPAFYNEPSIELAKLLTANSVFDRVFFANSGGEANEGAIKLARKWGKKN Sbjct: 61 LAAQSKKLINPSPAFYNEPSIELAKLLTANSVFDRVFFANSGGEANEGAIKLARKWGKKN 120 Query: 121 PAADGSARFEIITFKHSFHGRTLATMSASGKDGWDTMFAPQVPGFPKAVLNDLESVKALI 180 PAADGSARFEIITFKHSFHGRTLATMSASGKDGWDTMFAPQVPGFPKAVLNDLESVKALI Sbjct: 121 PAADGSARFEIITFKHSFHGRTLATMSASGKDGWDTMFAPQVPGFPKAVLNDLESVKALI 180 Query: 181 GEHTVAVMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQH 240 GEHTVAVMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQH Sbjct: 181 GEHTVAVMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQH 240 Query: 241 SGIEPDIMTLAKGIGGGVPLAALLAREEIACFEAGEQGGTYNGNPLMTAVGVAVIKELLK 300 SGIEPDIMTLAKGIGGGVPLAALLAREEIACFEAGEQGGTYNGNPLMTAVGVAVIKELLK Sbjct: 241 SGIEPDIMTLAKGIGGGVPLAALLAREEIACFEAGEQGGTYNGNPLMTAVGVAVIKELLK 300 Query: 301 PGFMESVRERGQYLRQRSLEISEKYGFEGERGEGLLRALQLGRDIGPQIVEAARNLEPVG 360 PGFMESVRERGQYLRQRSLEISEKYGFEGERGEGLLRALQLGRDIGPQIVEAARNLEPVG Sbjct: 301 PGFMESVRERGQYLRQRSLEISEKYGFEGERGEGLLRALQLGRDIGPQIVEAARNLEPVG 360 Query: 361 LLLNSPRPNLLRFMPALNVTKEEIDQMFSMLEEVLAKIGK 400 LLLNSPRPNLLRFMPALNVTKEEIDQMFSMLEEVLAKIGK Sbjct: 361 LLLNSPRPNLLRFMPALNVTKEEIDQMFSMLEEVLAKIGK 400 >gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 426 Score = 168 bits (426), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 133/398 (33%), Positives = 199/398 (50%), Gaps = 42/398 (10%) Query: 28 MWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADALAAQSKKLINPSPAFYNEPS-IELAKL 86 +W D G+R++D+ G AV GH + DA+ AQ K + + S +ELA+ Sbjct: 38 LW--DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQMDKFTHTAYQIVPYASYVELAER 95 Query: 87 ---LTANSVFDRVFFANSGGEANEGAIKLARKWGKKNPAADGSARFEIITFKHSFHGRTL 143 LT + + F ++G EA E AIK+AR + R +I F FHGRT+ Sbjct: 96 INRLTPGNYPKKTAFFSTGAEAVENAIKIARAH---------TGRPGVIAFAGGFHGRTM 146 Query: 144 ATMSASGKDG-WDTMFAPQVPG------FPKAVL-----NDLESVKALI-----GEHTVA 186 M+ +GK + F P PG +P A+ + LE+VK L + A Sbjct: 147 MGMALTGKVAPYKLGFGP-FPGDVFHAPYPSALHGITSEDALEAVKGLFKSDIEAKRVAA 205 Query: 187 VMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQHSGIEPD 246 ++LEPVQGEGG A +FM+GLR+L E +LLI DEVQSG GRTG+LFA +H + PD Sbjct: 206 IILEPVQGEGGFYAAPADFMRGLRALCDEHGILLIADEVQSGYGRTGKLFAMEHYDVLPD 265 Query: 247 IMTLAKGIGGGVPLAALLAREEIACFEA-GEQGGTYNGNPLMTAVGVAVIKELLKPGFME 305 +MT+AK + GG+PL+A+ R EI A G GGTY GNPL A +AV+ + + + Sbjct: 266 LMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGTYAGNPLAIASALAVLDVMEEEQLVT 325 Query: 306 SVRERGQYLRQRSLEISEKYGFEGE-RGEGLLRALQLGRD-IGPQIVEAARNLEPVG--- 360 + G L++ E+ E RG G + A++ G E + ++ Sbjct: 326 RGQRLGDKLQEHLKELRSSVPQIAEVRGVGAMVAVEFADPATGKPDAEYTKKVQQHALNN 385 Query: 361 ---LLLNSPRPNLLRFMPALNVTKEEIDQMFSMLEEVL 395 LL N++RF+ L + +D+ +L + + Sbjct: 386 GLLLLTCGSYGNVIRFLFPLTIPDTVMDEALGILAKAI 423 >gi|300312816|ref|YP_003776908.1| aminotransferase class III protein [Herbaspirillum seropedicae SmR1] Length = 440 Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/353 (32%), Positives = 175/353 (49%), Gaps = 42/353 (11%) Query: 25 GHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADALAAQSKKLINPSPAFYNE-PSIEL 83 G GM L D +GKRY+D G AV+ LGH + +A+ Q +L +F+ P+ EL Sbjct: 19 GEGMELIDQDGKRYIDASGGAAVSCLGHGHPRVIEAIRKQVGELAYAHTSFFTTAPAEEL 78 Query: 84 AKLLT--ANSVFDRVFFANSGGEANEGAIKLARKWGKKNPAADGSARFEIITFKHSFHGR 141 A +L A + V+F + G EA E A+KLAR++ + R II + S+HG Sbjct: 79 AAMLADAAPGSLNHVYFLSGGSEAVEAALKLARQYYVE---VGQPQRRHIIARRQSYHGN 135 Query: 142 TLATMSASGKDGWDTMFAPQV-------PGFPKAVLNDLES---------------VKAL 179 TL ++ G MF P + P + D ES + +L Sbjct: 136 TLGALAIGGNAWRREMFMPMLIEAHHVSPCYAYRNRADGESDVQYVQRLADELEQKILSL 195 Query: 180 IGEHTVAVMLEPVQG-EGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAY 238 + +A + E V G G +P ++ + +R++ + +LLI+DEV SGMGRTG LFA Sbjct: 196 GADQVIAFVAETVVGATAGAVPPVGDYFRKIRAVCDKYGVLLILDEVMSGMGRTGYLFAC 255 Query: 239 QHSGIEPDIMTLAKGIGGGV-PLAALLAREEI--ACFEAG---EQGGTYNGNPLMTAVGV 292 + G+ PDI+ +AKG+G G P+ A++ + I A + G TY G+ A V Sbjct: 256 EEDGVVPDIVVIAKGLGAGYQPIGAMICSDHIYDAVLRGSGFFQHGHTYIGHATACAAAV 315 Query: 293 AVIKELLKPGFMESVRERGQYLRQRSLEISEKYGFEGE----RGEGLLRALQL 341 AV K + + +E+VR+RG+ LR E+ + +G + RG GL ++L Sbjct: 316 AVQKTIQEERLLENVRQRGEQLRS---ELRQAFGDQAHVGDIRGRGLFVGVEL 365 >gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 456 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/411 (27%), Positives = 191/411 (46%), Gaps = 63/411 (15%) Query: 17 RPELVFTEGHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADALAAQSKKLINP---SP 73 R + + G+ D +G ++D G V+++G + +A+ QS+ L++ + Sbjct: 46 RMPIAMDQAFGVTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEAIRKQSESLMHSMEVNS 105 Query: 74 AFYNEPSIELAKLLTANSVFDRV-FFANSGGEANEGAIKLARKWGKKNPAADGSARFEII 132 + E + ++++++ D + FF G +A E A+K A++ + R +II Sbjct: 106 SKRTELAAKISEIMPDGLRGDCITFFTQGGSDALEAAVKFAKRV---------TGRHQII 156 Query: 133 TFKHSFHGRTLATMSASGKDGWDTMFAPQVPG-----FPKAVL----NDLESVKALIGEH 183 F +HG A+ + + + F P + G +P A +S + + GE+ Sbjct: 157 AFHGGYHGIWNASNALTTGTAYRKGFGPFMGGVIHAPYPYAYRFPFDTSHKSAEQIAGEY 216 Query: 184 T--------------VAVMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGM 229 AV++EPVQGEGG +P S EF+Q LR LLIVDEVQ+G Sbjct: 217 VDYLLNTPYTAADDVAAVIVEPVQGEGGYVPPSPEFLQILRKACDRSGALLIVDEVQAGA 276 Query: 230 GRTGQLFAYQHSGIEPDIMTLAKGIGGGVPLAALLAREEIAC-FEAGEQGGTYNGNPLMT 288 GRTG+++A +HSG++PD++T KGIGG +P+A L+ R ++A G Q T+ N + Sbjct: 277 GRTGKMWAVEHSGVKPDMLTFGKGIGGDMPMAGLVMRSDLAAKIPDGSQPNTFAANSISA 336 Query: 289 AVGVAVIKELLKPGFMESVRERGQYLRQRSLEISEKYGFEGE-RGEGLLRALQLGRDIGP 347 AV + I L P R L + S + GE RG GL+ IG Sbjct: 337 AVALTNISILQDPRLDLVNRAHTLGLEAQERIRSFNSPWVGEVRGRGLM--------IGI 388 Query: 348 QIVEAARNLEPVG----------------LLLNSPR-PNLLRFMPALNVTK 381 ++VE EP+ L++ R N++R MP+L + + Sbjct: 389 ELVENRETREPLSREKLGKLMDYVVGHGVLMIPCGRYTNVMRVMPSLTIPR 439 >gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/323 (29%), Positives = 151/323 (46%), Gaps = 35/323 (10%) Query: 18 PELVFTEGHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADALAAQSKKLINPSPA-FY 76 P + T HG+WL D +G+RYLD + W VN GH I AL Q +L + A F Sbjct: 31 PPIAITRAHGLWLHDSDGRRYLDAISSWWVNLFGHTNTRINAALVEQLGQLEHAMLAGFT 90 Query: 77 NEPSIELAKLLTA--NSVFDRVFFANSGGEANEGAIKLARKWGKKNPAADGSARFEIITF 134 +EP + L++ L A F+A+ G A E A+K++ + D + E I Sbjct: 91 HEPVVALSEQLAALTGQALGHCFYASDGASAVEIALKMSVHAWRNGGQPD---KNEFICI 147 Query: 135 KHSFHGRTLATMSASG----KDGWDTMFAP-QVPGFPKA---------------VLNDLE 174 +HG T+ + + + ++++ P V P A L+D+E Sbjct: 148 AGGYHGETVGALGVTDTPLFRSAYESLLRPAHVAASPDARQAAPGESAEEVAARALDDVE 207 Query: 175 SVKALIGEHTVAVMLEP-VQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTG 233 + A+++EP VQ G+ +++GLRSL LI DE+ G GRTG Sbjct: 208 RILQQRQGRIAALIVEPLVQCAAGMAMHDPGYVRGLRSLCDRYGAHLIADEIAVGCGRTG 267 Query: 234 QLFAYQHSGIEPDIMTLAKGIGGG-VPLAALLAREEI--ACFEAGEQGG-----TYNGNP 285 FA + +G+ PD++ L+KGI GG +PL+ +++ E I A ++ + G +Y GNP Sbjct: 268 SFFACEQAGVWPDLLCLSKGISGGYLPLSLVMSSEAIYQAFYDDDVRRGFLHSHSYTGNP 327 Query: 286 LMTAVGVAVIKELLKPGFMESVR 308 L +A + + +E R Sbjct: 328 LACRAALATLAIFAEDAVLERNR 350 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,165,595 Number of extensions: 48187 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 10 Length of query: 400 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 313 Effective length of database: 1,207,925 Effective search space: 378080525 Effective search space used: 378080525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)