BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0025.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi...   363   e-102
gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h...   134   6e-33

>gi|300312625|ref|YP_003776717.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  363 bits (932), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/178 (99%), Positives = 177/178 (99%)

Query: 1   MAVAPSCLSTLAARCTAVCAALVLAACSTTPTAPPIERLPGAPQSQAPALPATENGNEVA 60
           MAVAPSCLS LAARCTAVCAALVLAACSTTPTAPPIERLPGAPQSQAPALPATENGNEVA
Sbjct: 12  MAVAPSCLSPLAARCTAVCAALVLAACSTTPTAPPIERLPGAPQSQAPALPATENGNEVA 71

Query: 61  LYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGRQIDPSQLR 120
           LYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGRQIDPSQLR
Sbjct: 72  LYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGRQIDPSQLR 131

Query: 121 AGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMARTYFN 178
           AGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMARTYFN
Sbjct: 132 AGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMARTYFN 189


>gi|300310708|ref|YP_003774800.1| cell wall invasion-associated
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  134 bits (336), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 98/164 (59%), Gaps = 4/164 (2%)

Query: 15  CTAVCAALVLAACSTTP---TAPPIERLPGAPQSQAPALPATEN-GNEVALYALSLIDTG 70
            +A  A L LAA    P   T+P  ++L          L    N  +E+A  AL+++   
Sbjct: 27  ASAHSADLSLAAQDLPPPQATSPQAQQLISKTNLAIARLQDITNRASELATQALAMLGIN 86

Query: 71  YRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGRQIDPSQLRAGDLVFFNTM 130
           YR+GG +P  GLDCSG+V Y+F +A    +  ++ +I+R G +I    L+ GDLVF+NT+
Sbjct: 87  YRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTSLEISRVGEKIGKDNLQPGDLVFYNTL 146

Query: 131 NRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMAR 174
            R FSHVGIYLGDG+F+H+PS  G+V I  MD  Y+ +RF  AR
Sbjct: 147 RRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKRFNGAR 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 575,253
Number of extensions: 24744
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)