BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0024.p (256 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 514 e-147 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 167 1e-42 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 98 6e-22 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 86 3e-18 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 85 7e-18 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/256 (100%), Positives = 256/256 (100%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV Sbjct: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 Query: 61 EGHIEVRMGSGIYVCPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIA 120 EGHIEVRMGSGIYVCPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIA Sbjct: 61 EGHIEVRMGSGIYVCPPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIA 120 Query: 121 AVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHS 180 AVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHS Sbjct: 121 AVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHS 180 Query: 181 HFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIREYGDRVQQQ 240 HFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIREYGDRVQQQ Sbjct: 181 HFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIREYGDRVQQQ 240 Query: 241 ERPRKRAVRKSDTQLK 256 ERPRKRAVRKSDTQLK Sbjct: 241 ERPRKRAVRKSDTQLK 256 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 167 bits (422), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 10 RLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMG 69 RLY QI+D+LR ++ + F RLP ER LA QLGVSRPS+REAL+ALE+EG +E+RMG Sbjct: 21 RLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRMG 80 Query: 70 SGIYVC---PPVQRERRI-DLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEA 125 SG+Y+ PP Q+E D +++ AR + EG + A + I A+ Sbjct: 81 SGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRAI 140 Query: 126 YALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHSHFDGT 185 Y M QAG P DR FHIR+A TGN VLV V +L+D R P+ +L H++ Sbjct: 141 YDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDHYEPE 200 Query: 186 RVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIR 231 W A+ EH ++EA+ R+ QA+AAM+RH+ ++ R + + R Sbjct: 201 DSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTR 246 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 98.2 bits (243), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 3 IEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEG 62 + I Q L ++ QL + I G F GS+LP+E LA Q GVSR +REA+ L+ EG Sbjct: 2 FQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEG 61 Query: 63 HIEVRMGSGIYVCPPVQ-RERRID---LSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQ 118 +E R GSG++V + RID +SS E L+++ R IE EVA AA+ S + Sbjct: 62 VVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAED 121 Query: 119 IAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVG---LVTQLFDARLGPLF 175 + A+E A A + + AG D + AD FH LA+AT N + ++Q +A Sbjct: 122 LQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTR 181 Query: 176 KRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYS 226 + D +R +E EH ++EA+R + AR A + HM A R S Sbjct: 182 GNEARYEDFSRQVRE---EHEAIVEAIRAGDEMAARNAAQTHMFNAARRLS 229 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 12/221 (5%) Query: 7 EPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEV 66 +PQ L +++ L +I G G +LP+E ++ GVSR +REA+ L+ G +E Sbjct: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 67 RMGSGIYVCPPVQRER-RID---LSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAV 122 R G G +V + ID +++ L L+ R +E E A AA +++Q+ + Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEI 135 Query: 123 EEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPL-FKRLHS- 180 EA L +N Q G D + D FH +A ATGN + +++ L +G + KR+++ Sbjct: 136 REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG---MGVIPRKRINTA 192 Query: 181 ---HFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHM 218 H EH + EA+ + + E ARAAMR H+ Sbjct: 193 ELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHL 233 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 84.7 bits (208), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 109/229 (47%), Gaps = 15/229 (6%) Query: 6 IEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIE 65 + P+R ++ + L IVEG VGS+LPSE DLA VSRP +R+AL L + +E Sbjct: 27 VRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 Query: 66 VRMGSGIYVC---------PPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSK 116 GSG YV P + E RI LEL R +IE E A AA ++ Sbjct: 87 SLRGSGTYVKEKPGLAPAQPGAEPETRI--GHIMNGLEL---RLVIEPECAAMAALRRNR 141 Query: 117 QQIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQL-FDARLGPLF 175 Q + +E + + G D FH +A ATGN V ++ L +D Sbjct: 142 QDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNM 201 Query: 176 KRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTR 224 R H + Q+A+DEH + E +R ++ E AR AMR H++ A TR Sbjct: 202 LRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTR 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 771,348 Number of extensions: 31787 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 13 Length of query: 256 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,226,865 Effective search space: 212247645 Effective search space used: 212247645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)