BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0020.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333...   670   0.0  
gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport pr...    61   1e-10

>gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/343 (97%), Positives = 336/343 (97%), Gaps = 4/343 (1%)

Query: 1   MPFISKSSGKSSRKNTCKSTRRTVLKSLMAGTVALAALAAPAAFAAWPERPVTLVVPWGA 60
           MPFISKSS    R NTCKSTRRTVLKSLMAGTVAL+ LAAP AFAAWPERPVTLVVPWGA
Sbjct: 1   MPFISKSS----RNNTCKSTRRTVLKSLMAGTVALSVLAAPCAFAAWPERPVTLVVPWGA 56

Query: 61  GGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMM 120
           GGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMM
Sbjct: 57  GGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATVEISMM 116

Query: 121 HHQGLTKLTPRDFTPLALMNFDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASGTGQGG 180
           HHQGLTKLTPRDFTPLALMNFDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASGTGQGG
Sbjct: 117 HHQGLTKLTPRDFTPLALMNFDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASGTGQGG 176

Query: 181 IWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAV 240
           IWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAV
Sbjct: 177 IWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLIDAGKAV 236

Query: 241 PLVVMANEPAALYPKVPTLKSLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKKIYESK 300
           PLVVMANEPAALYPKVPTLKSLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKKIYESK
Sbjct: 237 PLVVMANEPAALYPKVPTLKSLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKKIYESK 296

Query: 301 DYKDFMSGRGFGVMYADSAEFGKFMDKSDADMGAILKTLGMAR 343
           DYKDFMSGRGFGVMYADSAEFGKFMDKSDADMGAILKTLGMAR
Sbjct: 297 DYKDFMSGRGFGVMYADSAEFGKFMDKSDADMGAILKTLGMAR 339


>gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 41  PAAFAAWPERPVTLVVPWGAGGGTDATARIIGALLEKDLGQP--VNVVNRTGGNGAVGHQ 98
           P A AA        +VP   GGG DA+ +++  +++++ G+P  + +    GG GAV   
Sbjct: 20  PCALAA------ECIVPAKPGGGMDASCKLLQRVMQEE-GEPRSLKLSYLPGGIGAVAWS 72

Query: 99  AIASAAPDGYTIGIATVEISMMH-HQG-LTKLTPRDFTPLALMNFDPAALTVSHDSPYKS 156
           ++ S    G    +A    S++   QG   K  P D   +A +  D   + V  D+P+++
Sbjct: 73  SVVSQRRGGPDTLVAFSGGSLLGLAQGKYGKAVPDDVRWVAGIGIDHGMIAVRSDAPWRN 132

Query: 157 FDDLLKAIKANPGKLKA--SGTGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVD 214
              LL+AI+ +P  +    SGT     W L +A +     + P   RFV   G   +   
Sbjct: 133 LKQLLQAIRRDPSAVTIGLSGTVGSQDW-LKMALLGQRAGIVPRQFRFVALEGGGDSFAA 191

Query: 215 LAAGGVDIVAASLPEARSLIDAGKAVPLVVMANE 248
           L AG V +++    EA   +  GK   L V++ +
Sbjct: 192 LQAGHVQVISGDASEAAYFMAEGKVRVLAVLSEQ 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,155,331
Number of extensions: 54430
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)