BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0016.p (361 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 338 4e-94 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 231 7e-62 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 218 8e-58 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 212 4e-56 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 211 1e-55 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 338 bits (867), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 166/170 (97%), Positives = 166/170 (97%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDQAARA 170 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLD R Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRV 170 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 231 bits (589), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 112/174 (64%), Positives = 138/174 (79%), Gaps = 4/174 (2%) Query: 1 MASVQIRAVKKQFGS----TQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 MA++ ++ V+K +G+ +I G+D +IADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKK 116 G+I+IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + K+ +D RV++ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDQAARA 170 AA IL L LL+R PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLD R Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRV 174 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 218 bits (554), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 108/171 (63%), Positives = 134/171 (78%), Gaps = 1/171 (0%) Query: 1 MASVQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 MA V I+ ++K + G ++ G+++DI DGEF VLVGPSGCGKSTLLRML GLEEI+GGE Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 + IGG VVN++ P +R IAMVFQ+YALYPHM V NMAF L +A K+ +D R++ AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDQAARA 170 IL ++ LL R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLD A R Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRV 171 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 212 bits (539), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 104/171 (60%), Positives = 134/171 (78%), Gaps = 1/171 (0%) Query: 1 MASVQIRAVKKQFGSTQ-IIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 MAS+ +RA +K +G +IR VD+DI + EF V +GPSGCGKSTLLR +AGLE++T G+ Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 + IGG VN+V R +AMVFQ+YAL+PHMTV +NM+F LTLAK KA ++++V++AA Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDQAARA 170 IL L +LL R P++LSGGQRQRVA+GRAIVR P VFLFDEPLSNLD R+ Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRS 171 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 211 bits (536), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 103/169 (60%), Positives = 129/169 (76%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MA+V IR + K++ +++R ++++I DGEF V VGPSGCGKSTLLRM+AGLEEI+ G++ Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 IG +N V R +AMVFQ+YALYPHM++ DNMAF L +A K KA +D V+ AA I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDQAAR 169 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLD A R Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALR 169 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.142 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 797,914 Number of extensions: 25717 Number of successful extensions: 479 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 136 Length of query: 361 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 275 Effective length of database: 1,212,660 Effective search space: 333481500 Effective search space used: 333481500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)