BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0006.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...   621   e-179
gi|300309997|ref|YP_003774089.1| Zn-dependent protease [Herbaspi...    80   2e-16
gi|300312597|ref|YP_003776689.1| Zn-dependent protease with chap...    69   4e-13

>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  621 bits (1601), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/312 (99%), Positives = 311/312 (99%)

Query: 1   VTLEVVAGVAQVRGEIERDCPIGQLRVSERFARAARKVSFPDGAYLEIIDGAAFRELLQE 60
           VTLEVVAGVAQVRGEIERDCPIGQLRVSERFARAARKVSFPDGAYLEIIDGAAFRELLQE
Sbjct: 18  VTLEVVAGVAQVRGEIERDCPIGQLRVSERFARAARKVSFPDGAYLEIIDGAAFRELLQE 77

Query: 61  TGHQDSLVVRLQQSWRHALAACAVLVAVVVLSYVYLLPLAAQGIAATLPVAVDRQIGQGT 120
           TGHQDSLVVRLQQSWRHALAACAVLVAVVVLSYVYLLPLAAQGIAATLPVAVDRQIGQGT
Sbjct: 78  TGHQDSLVVRLQQSWRHALAACAVLVAVVVLSYVYLLPLAAQGIAATLPVAVDRQIGQGT 137

Query: 121 LEFLDQHVLAPSQLDARRTQAITARFRALTAPLPDAPDYQIVFRKSRIGPNAFALPSGQI 180
           LEFLDQHVLAPSQLDARRTQAITARFRALTAPLPDAPDYQIVFRKSRIGPNAFALPSGQI
Sbjct: 138 LEFLDQHVLAPSQLDARRTQAITARFRALTAPLPDAPDYQIVFRKSRIGPNAFALPSGQI 197

Query: 181 VVTDEIVRLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIAATATVLFGDVSAVLANI 240
           VVTDEIVRLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIAATATVLFGDVSAVLANI
Sbjct: 198 VVTDEIVRLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIAATATVLFGDVSAVLANI 257

Query: 241 PTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLESAGKDDPTSPYLSSHPA 300
           PTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLESAGKDDP SPYLSSHPA
Sbjct: 258 PTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLESAGKDDPASPYLSSHPA 317

Query: 301 NDERIAHILGAR 312
           NDERIAHILGAR
Sbjct: 318 NDERIAHILGAR 329


>gi|300309997|ref|YP_003774089.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 17/155 (10%)

Query: 171 NAFALPSGQIVVTDEIVRLLDDDDALMGVLAHELGHVHRRHLMRRLIQ--SSAIAATATV 228
           NAFALP G I V   +V     +  L GV++HE+GHV +RH+ R L Q   +++   A +
Sbjct: 158 NAFALPGGFIGVNSGLVLAAQSESELAGVMSHEIGHVAQRHIARMLGQQKQNSMIQLAAI 217

Query: 229 LFGDVSAVL-----ANIPTVL--------LDLKYSRDIEREADDYAIAMFKANGLPRQKL 275
           + G ++ V      A + T++          L +SRD EREAD   + + +  G     +
Sbjct: 218 VLGALAGVSKAGGDAAMATMMGGTGLAVQRQLNFSRDAEREADRIGLQIMRDGGFDPSGM 277

Query: 276 ALVFEKLESAGKD--DPTSPYLSSHPANDERIAHI 308
              F +L++A ++  D   PYL +HP   ERIA I
Sbjct: 278 VTFFGRLQAASRNYSDAVPPYLMTHPLTTERIADI 312


>gi|300312597|ref|YP_003776689.1| Zn-dependent protease with
           chaperone function protein [Herbaspirillum seropedicae
           SmR1]
          Length = 273

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 105 AATLPVAVDRQIGQGTLEFLDQHVLAPSQLDARRTQAITARFRALTAPL-PDAPDYQI-V 162
           +A +  A  ++  Q   E   + +L  +    +R + I +R    T    PDA  +   V
Sbjct: 45  SAEMDAASSKEYAQVLAEAKSKGLLNRNAAQVQRVRNIASRLIPQTGVFRPDALKWNWEV 104

Query: 163 FRKSRIGPNAFALPSGQIVV-TDEIVRLLDDDDALMGVLAHELGHVHRRHLMRR----LI 217
              S    NA+ +P G+I V T  I +L   DD L  V+ HE+ H  R H   R    ++
Sbjct: 105 NVLSSDETNAWCMPGGKIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERASQQVV 164

Query: 218 QSSAIAATATVL-FGDVSAVLAN-IPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKL 275
            +SAI+  A +L  GDV       +   L+ L  SR  E EAD   + +    G   +  
Sbjct: 165 ANSAISIGAALLGLGDVGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAA 224

Query: 276 ALVFEKLESAGKDDPTSPYLSSHPANDERIAHI 308
             +++K+ S G ++P   ++S+HP++ ERIA +
Sbjct: 225 VTLWQKMASLGGEEPMK-FMSTHPSSSERIADL 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 905,029
Number of extensions: 35502
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)