BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0004.p (299 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312645|ref|YP_003776737.1| LysR family transcription regul... 573 e-165 gi|300313964|ref|YP_003778056.1| LysR family transcription regul... 144 1e-35 gi|300310906|ref|YP_003774998.1| LysR family transcription regul... 139 2e-34 gi|300312894|ref|YP_003776986.1| LysR family transcription regul... 137 1e-33 gi|300314051|ref|YP_003778143.1| transcription regulator protein... 130 2e-31 >gi|300312645|ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 573 bits (1476), Expect = e-165, Method: Compositional matrix adjust. Identities = 287/287 (100%), Positives = 287/287 (100%) Query: 13 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALT 72 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALT Sbjct: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALT 60 Query: 73 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFV 132 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFV Sbjct: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFV 120 Query: 133 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRSPADL 192 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRSPADL Sbjct: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRSPADL 180 Query: 193 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVLMFERE 252 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVLMFERE Sbjct: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVLMFERE 240 Query: 253 LQQGRLVCPFGQRIVLGAYWLTSLKSRPQTAAMAAFRQWLQSHAGAM 299 LQQGRLVCPFGQRIVLGAYWLTSLKSRPQTAAMAAFRQWLQSHAGAM Sbjct: 241 LQQGRLVCPFGQRIVLGAYWLTSLKSRPQTAAMAAFRQWLQSHAGAM 287 >gi|300313964|ref|YP_003778056.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 151/305 (49%), Gaps = 21/305 (6%) Query: 16 PLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEG 75 PL ALRAFE +AR LSFT AA+EL VTQ+AVS QV+ LE L LF RL R + LT G Sbjct: 6 PLTALRAFEATARLLSFTAAADELHVTQSAVSRQVRILEAHLEQKLFVRLTRRIELTRAG 65 Query: 76 LALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVDLR 135 A + Q+F RI Q R+R LT+GV+ A WL+PRL F +++ +D+R Sbjct: 66 AAYFQQIRQAFERICAAGEQLHARRQRHTLTIGVLPGLASLWLVPRLELFWRENKEIDVR 125 Query: 136 LLTNNNRVDLAGEGLDYAIRFGD----------------GAWHGTQAERLFEAPLAPMCA 179 ++ D +D +I+ G+ WH +A+ LF L +C Sbjct: 126 IVVATGAADFGRTTMDMSIQVGNLPGTTSQGLPLKKRMAVDWHDLRADLLFPDALVALCH 185 Query: 180 PAIAAR--LRSPADLGAETLLRS-YRSDEWGRWFAAAGAACPPLRGFVFDSSLALA-EAA 235 P + + +RS ADL L+ + R D W W G+ + + S +A +AA Sbjct: 186 PRLWRQHPVRSVADLSQHRLIHTAIRPDAWAHWLQQHGSRLGARQAGMECSQYPVALQAA 245 Query: 236 AQEAGVALLPVLMFERELQQGRLVCPFGQRI-VLGAYWLTSLKSRPQTAAMAAFRQWLQS 294 G+AL+P ++ E Q RL FG G Y+L + R +A+ FRQWL Sbjct: 246 MNGEGIALVPSVLAESFDPQHRLRRLFGGPTPSAGQYYLLTPGDRYDDSAVRRFRQWLLM 305 Query: 295 HAGAM 299 A AM Sbjct: 306 QAQAM 310 >gi|300310906|ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 153/292 (52%), Gaps = 8/292 (2%) Query: 13 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALT 72 + LPLNA+RAF +ARH SFT AA EL+VT A+S Q+KNLE LG+ LF R R + LT Sbjct: 4 LTLPLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLT 63 Query: 73 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFV 132 + G + + +A+ + + + V +FAV WL+P L F +++P + Sbjct: 64 ERGRQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGI 123 Query: 133 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGT-QAERLFEAPLAPMCAPAI--AARLRSP 189 +++T+ V AG D A+R G+ W T + +R E L + +PA+ A L Sbjct: 124 APQVVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPLEDV 183 Query: 190 ADLGAETLLRS-YRSDEWGRWFAAAGAACPPLRGFV-FDSSLALAEAAAQEAGVALLPVL 247 + L T+L S R ++W W AG + + FD + +A GVAL PV Sbjct: 184 SGLARHTVLLSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVVDGLGVALSPVS 243 Query: 248 MFERELQQGRLVCPFGQ-RIVLGAYWLTSLKSRPQTAAMAAFRQWLQSHAGA 298 + + +L+ GRLVCPF R+ L Y+L + ++ + A F +WL + GA Sbjct: 244 LADNDLRSGRLVCPFPDLRLTLAPYYL-GINAQAGSEAQ-LFARWLAEYRGA 293 >gi|300312894|ref|YP_003776986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 140/283 (49%), Gaps = 11/283 (3%) Query: 18 NALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEGLA 77 ++L AFE +ARH SF RAAEEL++T+ A+S Q+ LE LGV LF R+ + L G Sbjct: 9 SSLMAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVTLFERIGNRVRLLPHGQR 68 Query: 78 LLPVVAQSFGRI----ADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVD 133 V ++ R+ +++Q +G L + V TFA+ WL+PRL +F HP + Sbjct: 69 YASHVRETLERLDRDSQHLMSQPPNG---ASLDIAVSPTFAMRWLIPRLPRFAALHPHIT 125 Query: 134 LRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRS-PADL 192 + L L G GLD AI F AW G Q L + L P+C PA+ A PA Sbjct: 126 VHLSERMEPFLLPGSGLDAAIHFLHPAWTGMQTYSLLDEVLVPVCHPALVAGTSGVPALD 185 Query: 193 GAETLLRSYRSDEWGRWFAAAGAACP-PLRGFVFDSSLALAEAAAQEAGVALLPVLMFER 251 L R D W R+ A G + +G +D L EAA GVAL+P L E Sbjct: 186 ALPRLHRRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVET 245 Query: 252 ELQQGRLVCPFGQRIVLGAYWLTSLKSRPQ--TAAMAAFRQWL 292 EL QGRLV P+ Q + + L Q + + AF QW+ Sbjct: 246 ELAQGRLVAPWPQDSRISKTFCLVLPEPLQLGSEPLKAFAQWI 288 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/268 (33%), Positives = 138/268 (51%), Gaps = 8/268 (2%) Query: 32 FTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALTDEGLALLPVVAQSFGRIAD 91 F+RAAEE+ VT A+S QV+ LE+ LG+ LF R + +++T+ G + +S IA Sbjct: 25 FSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISITETGQRFAATIRKSLSEIAL 84 Query: 92 VLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFVDLRLLTNNNRVDLAGEGLD 151 R++ L + +FA WL PRL +F HP +++ L + + DL +G+D Sbjct: 85 AAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHPELEVVLQSAAHLNDLRLDGID 144 Query: 152 YAIRFGDGAWHGTQAERLFEAPLAPMCAPAI----AARLRSPADLGAETLLRSYRSDEWG 207 +RFG G + G +E+L + P+ AP + +L PADL +LLR + W Sbjct: 145 VGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLARPADLAHCSLLRVDSRESWQ 204 Query: 208 RWFAAAGAACPPLRG--FVFDSSLALAEAAAQEAGVALLPVLMFERELQQGRLVCPFGQR 265 W A AG P G V DSSL L + AA+ GVAL ++ +E+ G LV F Sbjct: 205 PWLAEAGLELPEPTGGLLVEDSSLTLRQ-AAEGKGVALARHVIASQEISTGELVRLFDVV 263 Query: 266 I-VLGAYWLTSLKSRPQTAAMAAFRQWL 292 + A++ L + +AAF++W+ Sbjct: 264 VPSEDAHYFVHLPEALEKPGVAAFKEWI 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 913,281 Number of extensions: 37595 Number of successful extensions: 312 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 286 Number of HSP's successfully gapped: 57 Length of query: 299 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 214 Effective length of database: 1,217,395 Effective search space: 260522530 Effective search space used: 260522530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)