BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0001.p
         (247 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312647|ref|YP_003776739.1| 2-keto-4-pentenoate hydratase [...   478   e-136

>gi|300312647|ref|YP_003776739.1| 2-keto-4-pentenoate hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  478 bits (1230), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/247 (98%), Positives = 244/247 (98%)

Query: 1   MHIDAATQLLLDARHSGLALDWRRLAVGDAETAYAVQDAQLLRLGPVGGWKVGSKGDGGT 60
           MHIDAATQLLLDARHSGLALDWRRLAVGDAETAYAVQDAQLLRLGPVGGWKVGSKGDGGT
Sbjct: 1   MHIDAATQLLLDARHSGLALDWRRLAVGDAETAYAVQDAQLLRLGPVGGWKVGSKGDGGT 60

Query: 61  PGCAPLPASGVLPSGTTLAGPQWRMRGLEVELALRVGRDYDPGEQLPDEAELRTVFDAIL 120
           PGCAPLPASGVLPSGTTLAGPQWRMRGLEVELALRVGRDYDPGEQLPDEAELRTVFDAIL
Sbjct: 61  PGCAPLPASGVLPSGTTLAGPQWRMRGLEVELALRVGRDYDPGEQLPDEAELRTVFDAIL 120

Query: 121 PAIEVVETRLGHPPCTNPWAGMADLQSHGALVTGAPQALPDVLSLRQIEASLSIDGQQVS 180
           PAIEVVETRLGHPPCTNPWAGMADLQSHGALVTGAPQALPD+LSLRQIEASLSIDGQQVS
Sbjct: 121 PAIEVVETRLGHPPCTNPWAGMADLQSHGALVTGAPQALPDLLSLRQIEASLSIDGQQVS 180

Query: 181 HTTGGNPADLWPLLGWLALHCARRGQPWRAGQIITTGSCTCHTMARGGRRVEAALHGIGA 240
           HTTGGNPADLWPLLGWLALHCARRGQPWRAGQIITTGSCT   MARGGRRVEAALHGIGA
Sbjct: 181 HTTGGNPADLWPLLGWLALHCARRGQPWRAGQIITTGSCTGLQMARGGRRVEAALHGIGA 240

Query: 241 VWLDFAG 247
           VWLDFAG
Sbjct: 241 VWLDFAG 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 886,668
Number of extensions: 38643
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,226,865
Effective search space: 201205860
Effective search space used: 201205860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)