BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0102.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310348|ref|YP_003774440.1| hypothetical protein Hsero_1015...   347   6e-97
gi|300312549|ref|YP_003776641.1| hemolysin activation/secretion ...   136   3e-33

>gi|300310348|ref|YP_003774440.1| hypothetical protein Hsero_1015
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  347 bits (891), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 171/183 (93%), Positives = 174/183 (95%)

Query: 122 FGGSDSTSTYGETFSAPGGALKNFTFFINTFGKSIAASARIYAWSDQPNGGSAVGKALFD 181
           FGGS ST+TYGETF APGGALKNFTFFINTFGKSIAASARIYAWSDQPNGGSAVGKALFD
Sbjct: 44  FGGSSSTATYGETFFAPGGALKNFTFFINTFGKSIAASARIYAWSDQPNGGSAVGKALFD 103

Query: 182 RAVTLNSNSLQSFTFHTGGLALSKNASYVALLTVTDNAQPGNSHWGMLQRRSGLPYDGKF 241
           R VTLNSNSLQSFTFHTGGLALSKNASYVALLTV D+AQP  S+WGML RRSGLPYDGKF
Sbjct: 104 RTVTLNSNSLQSFTFHTGGLALSKNASYVALLTVKDDAQPSGSYWGMLPRRSGLPYDGKF 163

Query: 242 VFYNNRGDSTRLTNSTWDGLSWPNSLAWKATFNDVPEPASMALLGMGLFGLMASRRRSKS 301
           VFYNN GDS RLTNSTWDGLSWPNSLAWKATFNDVPEPASMALLGMGLFGLMASRRRSKS
Sbjct: 164 VFYNNNGDSFRLTNSTWDGLSWPNSLAWKATFNDVPEPASMALLGMGLFGLMASRRRSKS 223

Query: 302 AQA 304
           AQA
Sbjct: 224 AQA 226


>gi|300312549|ref|YP_003776641.1| hemolysin activation/secretion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 584

 Score =  136 bits (342), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 98/120 (81%)

Query: 1   LPIVLSLLQTCLLASAWAQADLSTQEFQRQQERERELRRQQERGPDVRLPTQPSAPSTRI 60
           LPIVL L Q  +++SAWAQADLSTQ+FQRQQERERELRRQQERGPDVRLP QP A +  +
Sbjct: 22  LPIVLCLCQAGVMSSAWAQADLSTQQFQRQQERERELRRQQERGPDVRLPAQPGAAAEAV 81

Query: 61  PEQETPCYPLQRIALRGEESARFAWLLDGADADVAGRCLGVQGINAVMSRLQNAIVARGY 120
           P QE+PC+ + R+ L G  SARF WLLD  +A+  GRCLGVQGINAVMS LQNAIVARGY
Sbjct: 82  PAQESPCFAVHRVVLDGPGSARFDWLLDLPEANPGGRCLGVQGINAVMSALQNAIVARGY 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 908,890
Number of extensions: 38003
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)