BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0096.p (376 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-me... 745 0.0 gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding prote... 89 5e-19 gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [He... 76 4e-15 >gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/376 (98%), Positives = 372/376 (98%) Query: 1 MTLAAQRILIIGGGFSGMSAAIDLRPRGAQVDLVELDAQWRNYGAGISLGPATLRALKQL 60 MTLAAQRILIIGGGFSGMSAAIDLR RGAQVDLVELDAQWRNYGAGISLGPATLRALKQL Sbjct: 1 MTLAAQRILIIGGGFSGMSAAIDLRRRGAQVDLVELDAQWRNYGAGISLGPATLRALKQL 60 Query: 61 GVLEAFLREGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGGAILRPVLARILADATRA 120 GVLEAFLREGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGGAILRPVLARILADATRA Sbjct: 61 GVLEAFLREGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGGAILRPVLARILADATRA 120 Query: 121 AGADVRLGCTFSALREVGHEVEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYS 180 AGADVRLGCTFSA+REVGH+VEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYS Sbjct: 121 AGADVRLGCTFSAVREVGHKVEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYS 180 Query: 181 GQAVWRAVLPRPQEIVTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDPATFVSH 240 GQAVWRAVLPRPQEIVTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDP TFVSH Sbjct: 181 GQAVWRAVLPRPQEIVTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDPTTFVSH 240 Query: 241 LRGLLEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLA 300 LRGLLEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLA Sbjct: 241 LRGLLEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLA 300 Query: 301 SGACIGIEDALVLADELERHGAAPQALAAFEERRWERCRMVVENSARLGEIEVEGGDKDE 360 SGACIGIEDALVLADELERHG PQALAAFEERRWERCRMVVENSARLGEIEVEGGDKDE Sbjct: 301 SGACIGIEDALVLADELERHGTVPQALAAFEERRWERCRMVVENSARLGEIEVEGGDKDE 360 Query: 361 HSRIMRASHAALVQPI 376 HSRIMRASHAALVQPI Sbjct: 361 HSRIMRASHAALVQPI 376 >gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 139/326 (42%), Gaps = 17/326 (5%) Query: 28 GAQVDLVELDAQWRNYGAGISLGPATLRALKQLGVLEAFLREGAAGD-GVRLCLPHGPQV 86 G V + E + GAGI +GP ++ L+++G+ + R+G+ D G + Sbjct: 27 GFNVRVYEQAPGFSRLGAGIHVGPNVMKVLRRIGIEDEMNRQGSRPDFWYSRHWQTGDVL 86 Query: 87 AELPTPRLASPDVPGGGAILRPVLARILADATRAAGADVRL--GCTFSALREVGHEVEVD 144 A++P L V GA V + A RL G + + + G V + Sbjct: 87 AQIP---LGDYAVKHYGASYLTVHRGDFHELLIKALPSERLSFGKCLTKVEDRGDVVILS 143 Query: 145 FTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYSGQAVWRAVLPRPQ------EIVTC 198 F DG T D+VIGADG+ S++R L P P+Y+G RAV P P+ C Sbjct: 144 FADGTTEEADIVIGADGVNSRIREELLGVEP-PKYAGYLAHRAVFPTPELKAGMLPFDAC 202 Query: 199 TMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDPATFVSHLRGLLEEFSAPVLKTIRE 258 W V V+ L+ PV + ++ + + E T++ Sbjct: 203 VKWWSDDRHMMVYFVTSKANELYYVTGVPVEKWDLNDRWLPSSKEEMRETFHGWHPTVQA 262 Query: 259 QLDDNARII-FRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLASGACIGIEDALVLADEL 317 +D + + LE LP W +GR+VL+GDA H PH+A GA + IED +LA Sbjct: 263 LVDATVEVTKWSLLERDPLPL-WSRGRLVLLGDACHPMKPHMAQGAAMAIEDGAMLARCF 321 Query: 318 ERHGAA--PQALAAFEERRWERCRMV 341 + G + A A +E R R V Sbjct: 322 KEVGVSNYADAFALYEANRAARASKV 347 >gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 105/361 (29%), Positives = 151/361 (41%), Gaps = 37/361 (10%) Query: 8 ILIIGGGFSGMSAAIDLRPRGAQVDLVELDAQWRNYGAGISLGPATLRALKQLGVLEAFL 67 + I G G +G++ A+ L+ G +V L+E Q G+G+ L P L L+ LG+ F Sbjct: 6 VAIAGAGPAGLAMALYLKRAGHRVSLLERFLQAAPVGSGLILQPTGLTVLQDLGL---FS 62 Query: 68 REGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGG----AILRPVLARILADATRAAGA 123 R A G R+ +G T D GG A+ R L +L +A + G Sbjct: 63 RIAALGQ--RIDRLYGADALSGKTVLDVRYDAIAGGRYGIAVHRAALFGVLLEAAQQEGI 120 Query: 124 DVRLGCTFSALREVGHEVEVDFTDGQTRR---YDLVIGADGLYSKLRMH-LFPHAPKPRY 179 +V G L G + + DG RR +DLVI A G S LR H L P+P Sbjct: 121 EVETGQDIGNLEHTGAQACLTAADG--RRIGGFDLVIDASGARSPLRRHALHSCEPRPLP 178 Query: 180 SGQAVWRAVLPRP----------QEIVTCTMWMGPRIKPGVNPVSKDE-MYLFVTEPRPV 228 G A W ++ +P Q + +G + P P +DE M F RP Sbjct: 179 YG-AFWVSLRAQPGLSFGHNSLVQRYRRASTMIG--VLPIGRPTPQDEPMVAFFWSTRPD 235 Query: 229 N-EHVDPATFVSHLRGL--LEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRV 285 E + A + G+ L AP L Q+D ++ LP P Y R+ Sbjct: 236 RVESLKQAGLSAWKDGVHALWPECAPYLA----QIDGFEQMTLARYGHHTLPLP-YGERL 290 Query: 286 VLIGDAVHATTPHLASGACIGIEDALVLADELERHGAAPQALAAFEERRWERCRMVVENS 345 +IGDA H+T+P L GA + + DA L+ L++ QAL + R R S Sbjct: 291 AIIGDAAHSTSPQLGQGANMALLDARALSHALQQSETLEQALPRYAASRRRHVRTFQAMS 350 Query: 346 A 346 A Sbjct: 351 A 351 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,385,470 Number of extensions: 66665 Number of successful extensions: 235 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 231 Number of HSP's successfully gapped: 3 Length of query: 376 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 289 Effective length of database: 1,207,925 Effective search space: 349090325 Effective search space used: 349090325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)