BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0095.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containi...   225   8e-61
gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin su...    57   3e-10

>gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  225 bits (573), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 111/112 (99%), Positives = 111/112 (99%)

Query: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPGRRDAYFDG 60
           MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLP RRDAYFDG
Sbjct: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDG 60

Query: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL 112
           TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL
Sbjct: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL 112


>gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 1   MYLCHITQLPENG-ARGFDTESAG-QATIFVLRRGDQVRAWRDSCPHHGTPLPGRRDAYF 58
           + +C   +L E G  + F  +  G +A+ FV+R G  V  + + C H    L      +F
Sbjct: 7   ILICASAELVEGGLGKRFPVQVRGDEASGFVVRYGGVVYGYLNRCAHLPVELDWAEGEFF 66

Query: 59  DGTGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDG 102
           + +G +L+CA HGA++ P TG C  GPC G  L  + + ++ +G
Sbjct: 67  ESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKI-MTVEREG 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.143    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 451,299
Number of extensions: 20044
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)