BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0093.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310337|ref|YP_003774429.1| hypothetical protein Hsero_1004...   785   0.0  

>gi|300310337|ref|YP_003774429.1| hypothetical protein Hsero_1004
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/386 (98%), Positives = 383/386 (99%)

Query: 1   MFRYFPTNYVWNLSVDLAIEMGARIGEIEAMCAPLQEAARQPDAEGTAAFRATWADMAEK 60
           MFRYFPTNYVWNLSVDLAIEMGARIGEIEAMCAPLQEAARQPDAEGTAAFRATWADMAEK
Sbjct: 1   MFRYFPTNYVWNLSVDLAIEMGARIGEIEAMCAPLQEAARQPDAEGTAAFRATWADMAEK 60

Query: 61  LCGLAAEDEMRGRLLSAGEKYKRAASYLLTCERLQGHGAPGRLELYKRFLEVFQRGIALA 120
           LC LAAEDEMRGRLLSAGEKYKRAASYLLTCERLQGHGAPGRLELYKRFLEVFQRGIALA
Sbjct: 61  LCSLAAEDEMRGRLLSAGEKYKRAASYLLTCERLQGHGAPGRLELYKRFLEVFQRGIALA 120

Query: 121 GENCERVEIAYEGRGISGLYTRARNVQGPAPVLVQLNGLDSTKEMKYLVGLPGWLAERGV 180
           GENCERVEIAYEGR ISGLYTRARNVQGPAPVLVQLNGLDSTKEMKYLVGLPGWLAERGV
Sbjct: 121 GENCERVEIAYEGRVISGLYTRARNVQGPAPVLVQLNGLDSTKEMKYLVGLPGWLAERGV 180

Query: 181 ASLVIDQPGTGEALRLHGLTARFDAEHWARHVVDWLEQREEVDPARIGCEGVSLGGYYCP 240
           ASLVIDQPGTGEALRLHGLTARFDAEHWARHVVDWLEQRE+VDP RIGCEGVSLGGYYCP
Sbjct: 181 ASLVIDQPGTGEALRLHGLTARFDAEHWARHVVDWLEQREDVDPTRIGCEGVSLGGYYCP 240

Query: 241 RVVAMEPRFACGVVWGANHDWREVQKRRLEKEGDFPVPHYWQHVCWVWGAKDIEDFMRIA 300
           RVVAMEPRFACGVVWGANHDWR+VQKRRLEKEGDFPVPHYWQHVCWVWGAKDI+DFMRIA
Sbjct: 241 RVVAMEPRFACGVVWGANHDWRDVQKRRLEKEGDFPVPHYWQHVCWVWGAKDIDDFMRIA 300

Query: 301 EDVHLDGVVEKIRVPFLVTHGEKDSQIPLKWAHRTYEQLVNSPKRELKVFTDREGGVQHA 360
           EDVHLDGVVEKIRVPFLVTHGEKDSQIPLKWAHRTYEQLVNSPKRELKVFTDREGGVQHA
Sbjct: 301 EDVHLDGVVEKIRVPFLVTHGEKDSQIPLKWAHRTYEQLVNSPKRELKVFTDREGGVQHA 360

Query: 361 SFDNSINAGHYIADWVAETLGGRTKR 386
           SFDNSINAGHYIADWVAETLGGRTKR
Sbjct: 361 SFDNSINAGHYIADWVAETLGGRTKR 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,355,950
Number of extensions: 60475
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)