BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0092.p (304 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003... 615 e-177 gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway... 83 3e-17 gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway... 59 3e-10 >gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003 [Herbaspirillum seropedicae SmR1] Length = 305 Score = 615 bits (1586), Expect = e-177, Method: Compositional matrix adjust. Identities = 302/303 (99%), Positives = 302/303 (99%) Query: 2 RGFVPACRLATCALLTMAAGPAAYAFEGGVSPFPTGSTSEYIAALPPIPGLFAVEQFNYS 61 RGFVPACRLATCALLTMAAGPAAYAFEGGVSPF TGSTSEYIAALPPIPGLFAVEQFNYS Sbjct: 3 RGFVPACRLATCALLTMAAGPAAYAFEGGVSPFLTGSTSEYIAALPPIPGLFAVEQFNYS 62 Query: 62 SSNGLYDNNGNKLPIPFKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEVAGHS 121 SSNGLYDNNGNKLPIPFKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEVAGHS Sbjct: 63 SSNGLYDNNGNKLPIPFKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEVAGHS 122 Query: 122 ETHNGLSNVTATPVLLRWDVAAHTNVTFGFDISLETGSYSPTRPSVAVGYTSWQPVLAVR 181 ETHNGLSNVTATPVLLRWDVAAHTNVTFGFDISLETGSYSPTRPSVAVGYTSWQPVLAVR Sbjct: 123 ETHNGLSNVTATPVLLRWDVAAHTNVTFGFDISLETGSYSPTRPSVAVGYTSWQPVLAVR 182 Query: 182 HNNPDGLDLGISNRLLINDRNSSTNYRSGTAYVADFIGGWNVGKWKFGVTGSYLNQFTDD 241 HNNPDGLDLGISNRLLINDRNSSTNYRSGTAYVADFIGGWNVGKWKFGVTGSYLNQFTDD Sbjct: 183 HNNPDGLDLGISNRLLINDRNSSTNYRSGTAYVADFIGGWNVGKWKFGVTGSYLNQFTDD 242 Query: 242 RQNGADITGNRARSLSLGPTVAYNAGPFSINMNYQRGLYAANTAKSDAIWINFAMPLWMG 301 RQNGADITGNRARSLSLGPTVAYNAGPFSINMNYQRGLYAANTAKSDAIWINFAMPLWMG Sbjct: 243 RQNGADITGNRARSLSLGPTVAYNAGPFSINMNYQRGLYAANTAKSDAIWINFAMPLWMG 302 Query: 302 GGH 304 GGH Sbjct: 303 GGH 305 >gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 108/252 (42%), Gaps = 13/252 (5%) Query: 24 AYAFEGGVSPFPTGSTSEYIAALPPIP--GLFAVEQFNYSSSNGLYDNNGNKLPIPFKSS 81 A A E G + P G T LPP G V YS+S L D G +P F Sbjct: 32 AQAVEQGATITPIGITDFGAGMLPPSSPFGTVGVRASYYSAST-LKDGAGKSIPNDFHID 90 Query: 82 AYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTEV-----AGH---SETHNGLSNVTAT 133 + V+ LGA+ VLP + + + AG S +GL ++ Sbjct: 91 VKTLALAYFYMTDVEVLGARFGVGGVLPFIDISGGLKVGTPAGPLSVSGRDSGLGDMQVL 150 Query: 134 PVLLRWDVAAHTNVTFGFDISLETGSYSPTRP-SVAVGYTSWQPVLAVRHNNPDGLDLGI 192 P +L W + V G I TG+YS ++ + V + ++ P + + GL+L Sbjct: 151 PFILAWQLPPSVFVNAGLMIQAPTGAYSTSKAFNAGVNHWTYSPFVGATYITSSGLELST 210 Query: 193 SNRLLINDRNSSTNYRSGTAYVADFIGGWNVGKWKFGVTGSYLNQFTDDRQNGADITGNR 252 L +N N +T YRSG Y +F G ++ W G+ G Q +DD G+ GNR Sbjct: 211 QVSLNVNTVNPATRYRSGVEYRQEFAIGQHIQSWTAGLAGYVYRQLSDDSGPGSG-DGNR 269 Query: 253 ARSLSLGPTVAY 264 R +LGP V++ Sbjct: 270 GRVYALGPAVSF 281 >gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 32/244 (13%) Query: 44 AALPPIPGLFAVEQFNYSSSNGLYDNNGNKLPIPFKS--SAYSATTRLL-----ASYGVQ 96 A LP PG + VE YS + L DNNGN+L P S ++ T+ + A +G + Sbjct: 39 APLPGGPGFYFVEYLTYSKATKLVDNNGNRLGFPATQDISVFAPVTQFIYVPPGAKFGNK 98 Query: 97 WLGAKVYSQLVLPVVSLHTEVAGHSET---HNGLSNVTATPVLLRWDVAAHTN-----VT 148 LG +V LV V S + ++ + G+ +++A V +++D Sbjct: 99 QLGFQV---LVPWVASAKVDDGANNAVLRGNTGIGDISAG-VSVQYDPIMGAQGPLYAQR 154 Query: 149 FGFDISLETGSYSPTRPSVAVGYTSW--QPVLAVRHNNPDGLDLGISNRLLINDRNSS-- 204 F L TG+Y +V G +W P A L L N RN++ Sbjct: 155 FELQFILPTGAYD-RNATVNPGSNTWAFDPYWAGTLWASQNLSFSWRLHYLWNARNNAPS 213 Query: 205 -------TNYRSGTAYVADFIGGWNVG-KWKFGVTGSYLNQFTDDRQNGADITGNRARSL 256 ++ ++G A A+F + + W G G +L Q TD + NGAD++G R R + Sbjct: 214 AAFGNNVSSTQAGQAAHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVNGADVSGRRERVV 273 Query: 257 SLGP 260 LGP Sbjct: 274 GLGP 277 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,067,913 Number of extensions: 46430 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 3 Length of query: 304 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 219 Effective length of database: 1,217,395 Effective search space: 266609505 Effective search space used: 266609505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)