BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0091.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310335|ref|YP_003774427.1| transcription regulator protein... 600 e-173 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 133 2e-32 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 121 6e-29 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 117 8e-28 gi|300309871|ref|YP_003773963.1| transcription regulator protein... 115 7e-27 >gi|300310335|ref|YP_003774427.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 600 bits (1547), Expect = e-173, Method: Compositional matrix adjust. Identities = 301/305 (98%), Positives = 301/305 (98%), Gaps = 1/305 (0%) Query: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 MRFNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM Sbjct: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 Query: 61 EPTPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVLRARA 120 EPTPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVL ARA Sbjct: 61 EPTPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVL-ARA 119 Query: 121 HAEGKHIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSA 180 HAEGKHIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSA Sbjct: 120 HAEGKHIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSA 179 Query: 181 LAQGELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSFASALALVQGT 240 LAQGELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSFASALALVQGT Sbjct: 180 LAQGELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSFASALALVQGT 239 Query: 241 DRIATVHARLAQLLAAQWPVVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLRRVFLESAQ 300 DRIATVHARLAQLLA QWPVVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLRRVFLESAQ Sbjct: 240 DRIATVHARLAQLLAPQWPVVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLRRVFLESAQ 299 Query: 301 EMPPA 305 EM A Sbjct: 300 EMDAA 304 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 161/313 (51%), Gaps = 26/313 (8%) Query: 3 FNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRMEP 62 FN +DLNLL A+ E S++ A ++HLSQ A+S AL RLR+ FDD L I+ M+P Sbjct: 4 FNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQP 63 Query: 63 TPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIP---RVLRAR 119 TP A L ++ L+ + ++ F PA+STR FR S++D + +P +L A+ Sbjct: 64 TPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQ 123 Query: 120 A--------HAEGKHIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERH 171 A H+ AL T LD A +L L C E +FRE + Sbjct: 124 APDVRLQVEQVPPAHLEEALR------TGQLDFAFGNLPALKPVTC-----HELLFRETY 172 Query: 172 VCVVWRDSALAQ-GELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSF 230 VC++ + L Q +L L+ ++A HV++ ++ VE +KLG RR+ ++ F Sbjct: 173 VCLMRQRDGLPQRAQLELDEFLAMSHVLVESAESSHHQVENSF-QKLGVQRRISLSIPHF 231 Query: 231 ASALALVQGTDRIATVHARLAQLLAAQWPVVI--KESPLSLGEMRQMMQWHRYRSNDPGI 288 ++ +D +ATV AR+A+L ++ P V + P+++ + + WH+ +D G Sbjct: 232 TVLPRILGKSDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGN 291 Query: 289 QWLRRVFLESAQE 301 WLR++ ++ Q+ Sbjct: 292 SWLRQIVIDLLQQ 304 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 121 bits (304), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 144/296 (48%), Gaps = 16/296 (5%) Query: 5 KLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRMEPTP 64 DLNLL A+ E S+S AA K+ +SQ A+S AL +LR D L ++ GR M+PTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 65 RAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVLRARAHAEG 124 RA L ++L+R+ + + F PA +T+ F +++SD +L+PR+L R E Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLE-RIRDEA 121 Query: 125 KH---IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRER-----HVCVVW 176 H + + P + +L+ EVDL + PD F++R VC++ Sbjct: 122 PHASVVTVTMAP--AELVAALESGEVDLAI----GYFPDLRNRNFFQQRLFSQDFVCLLR 175 Query: 177 RDSALAQGELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSFASALAL 236 L +++LE Y A+GH+V+ G + E ++ R+ RRV +++ F + L Sbjct: 176 AGHPLPAQKISLEHYQAAGHIVVKAEGRDQPMCERFLLRR-KIRRRVVLSTAHFMAIPLL 234 Query: 237 VQGTDRIATVHARLAQLLAAQWPVVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLR 292 V +D +ATV + + + + E + + WHR D G WLR Sbjct: 235 VATSDLVATVPRAFGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLR 290 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 117 bits (294), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 152/307 (49%), Gaps = 21/307 (6%) Query: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 M F LDLNLL DA++TE +++RAA + ++Q A+SNAL RLR+ +D+L+I+ + Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 Query: 61 EPTPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVLRARA 120 +PTPRAE L V L ++ IA +F + + FR+++ D T ++ +P ++R Sbjct: 61 KPTPRAEELWPTVRRALSELEAVIAP-ESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119 Query: 121 HAEGKHIRFALMP-QVQDPTRSLDRAEVDLLV--LP---------QEFCTPDHPAEEVFR 168 + I+ +MP +DP L R ++DL V P Q ++ Sbjct: 120 R-DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYT 178 Query: 169 ERHVCVVWRDSALAQGELTLERYMASGHVVMV---PPGANASSVEAWMARKLGFARRVEV 225 ++VCV+ + LA LTL+ Y + H+++ P A V A M R+ R++ + Sbjct: 179 GQYVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRE----RKILL 234 Query: 226 TSFSFASALALVQGTDRIATVHARLAQLLAAQWPVVIKESPLSLGEMRQMMQWHRYRSND 285 T F +A +V ++ I + L +V+KE P E M WH + + Sbjct: 235 TVNQFFTAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARN 294 Query: 286 PGIQWLR 292 P +WLR Sbjct: 295 PAHKWLR 301 >gi|300309871|ref|YP_003773963.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 143/295 (48%), Gaps = 12/295 (4%) Query: 7 DLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRMEPTPRA 66 DLNLL+ALDAL+ E S++ AA ++ LS SAMS L RLRE D LL++ GR+M TP A Sbjct: 23 DLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVLTPCA 82 Query: 67 EVLKDAVHDVLRRIDGSI-AALPAFVPAESTREFRISVSDFTLSVLIPRVLRARAHAEGK 125 E L++ V +V+ + ++P + R+F I +D + L +++ A AE Sbjct: 83 EALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEA-VTAEAP 141 Query: 126 HIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSALAQ-G 184 +R +P+V+ L DL + P+ + +FR+R V V LA Sbjct: 142 LVRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLAALR 201 Query: 185 ELTLERYMASGHVVMVPPGANASSV-EAWMARKLGFARRVEVTSFSFASALALVQGTDRI 243 ++ ERY A HV P G A + EA AR G RRV SF ALA+V+ +D + Sbjct: 202 RVSAERYCAFDHVSASPRGVAAGPLHEALAAR--GLVRRVVAVVPSFPGALAVVRTSDLV 259 Query: 244 ATVHARLAQLLAAQWP------VVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLR 292 V A+ + + E PL L + + WH DP +WLR Sbjct: 260 TMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLR 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 901,775 Number of extensions: 36082 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 8 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)