BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0087.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310331|ref|YP_003774423.1| microcystin-dependent protein [...   128   6e-31

>gi|300310331|ref|YP_003774423.1| microcystin-dependent protein
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  128 bits (322), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 52/311 (16%)

Query: 9   MKKIAALSVLSAAMMGAS--SNSQACSADPFISAVCIMALAGNQASGGFDS-YVPAVGQQ 65
            +K +AL  L++ +M A+   NS ACS  P +++VCIMA+    + G F+  YV A GQQ
Sbjct: 5   FRKASALLALASGLMTAAWAPNSFACSDTPVLASVCIMAVP--PSFGSFNRQYVLAAGQQ 62

Query: 66  LSVSSYQALYSLVGNTYGGNS-SLFNLPNLQGRFVVGAGVQAATGIAYPIGKAQDNTPTI 124
           LS++ Y ALYSL+G TYGGN+ + FNLP+L+GR +VG     A G  +P G    NT +I
Sbjct: 63  LSINQYTALYSLIGITYGGNAQTTFNLPDLRGRVLVG-----ANGTTFPAGATGGNT-SI 116

Query: 125 LLTESQLPSHTHALSSATSPISFSGNVSLSFQNVSFATSLSGVTAATTLANV--GGSVDG 182
            L+ +QLP H   +++          + +    V+  T LSG++A T L+ V   G+  G
Sbjct: 117 NLSIAQLPPHNFVVAA----------IPVDLSRVTATTMLSGLSATTNLSGVTIAGTPSG 166

Query: 183 SALQLYASHGGTTTNEPQGASLTLTTGSSAKIYSNATPSVSM----IGGANG---SIRGT 235
             +   +++GG     P G  L     ++A  Y++  P+V++    IGG      S   T
Sbjct: 167 LTIAASSTNGGVA--SPDGNYLGKPAAAAAAAYTSVAPNVTLNSASIGGQMSMTISNAAT 224

Query: 236 APVTFT-GTPTTTLGGAATTIMVGTPTASVAGLGANITGKTAATGIGAAVNIMPSYIAMR 294
           APV+ T G  TT +GG+AT                  TG T   G GAA+  MP Y+AM 
Sbjct: 225 APVSITSGGATTAIGGSATA-----------------TGVTNTLGTGAAIPTMPPYLAMT 267

Query: 295 YFI-AVTGLYP 304
           Y+I A  G+YP
Sbjct: 268 YYIAAANGIYP 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.124    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,108
Number of extensions: 30636
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)