BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0086.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310332|ref|YP_003774424.1| SEL1 subfamily TPR repeatcontai...   281   6e-77
gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1 sub...    58   8e-10

>gi|300310332|ref|YP_003774424.1| SEL1 subfamily TPR
           repeatcontaining protein [Herbaspirillum seropedicae
           SmR1]
          Length = 328

 Score =  281 bits (718), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 146/287 (50%), Positives = 195/287 (67%)

Query: 24  MEAAQAALTAKDYPKAYAMYLRQSDRNGLAQFVVGMFHQEGWGRQRDPVKACTWFEKAAQ 83
           +  A  AL AKDY +AYA++ R +  N LAQF +G+F +EGWGR  +PV AC WFEKAA 
Sbjct: 38  LTTANKALAAKDYSRAYALFARHAANNPLAQFSLGLFEREGWGRTSNPVAACNWFEKAAH 97

Query: 84  HKVPAAANNWADCLAQGVGRAADIPAALKWYDLATQQGHLISACHAADYYLQGKGIPQDV 143
             +PAA     DCLA+G+GR  D  AA  WY  A   G   + C A + Y++GK + +DV
Sbjct: 98  SNIPAAQQFLGDCLAKGIGREVDGKAAESWYRKAAASGIAYALCSAGELYIEGKTLEKDV 157

Query: 144 PRGMAMCTAVAQASSIPAMLQMAGYYEQGRFVPQDLARARAWYQAAAELGSTEAQFHLGV 203
            RG+A+C A AQA S PAML++A YY  G+ VPQ+L  AR WY+ AA+    EAQ+ LG+
Sbjct: 158 DRGLALCLAAAQADSAPAMLRLADYYRDGKDVPQNLVAARYWYEQAAQRHQHEAQYRLGI 217

Query: 204 MLAQGDGGPADLAAAVNWLESAAGSGYVPAYLPLALLYAKLPVQADTGLLAPEHLAKAYL 263
           M+++G GG  D+ +A+ WLE AA  GY PAYLP+A+LYA       TG+L+PE+LAK Y+
Sbjct: 218 MMSEGHGGDVDIPSALFWLEHAAMEGYRPAYLPVAILYANASPDPKTGMLSPENLAKVYM 277

Query: 264 WNSAAKATVTDATARAAVERLDGMISAVMPAAWRPTLDQQVAAHLAQ 310
           WNSAAKA  T+A   A +ER++ M+ AVMP  W+P LD++VA HLA+
Sbjct: 278 WNSAAKARTTNAVQLAEIERIEKMVLAVMPPQWQPDLDRKVAEHLAK 324


>gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1
           subfamily protein [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 9/198 (4%)

Query: 29  AALTAKDYPKAYAMYLRQSDRNGL--AQFVVGMFHQEGWGRQRDPVKACTWFEKAAQHKV 86
           AA+ A   P+A A +LR +    +  AQ ++G     G G   D  +A  W E AAQ   
Sbjct: 22  AAIVAAHSPEAIA-WLRAAASQSVPRAQAILGQRLLFGEGCAADAGEAVHWLELAAQADD 80

Query: 87  PAAANNWADCLAQGVGRAADIPAALKWYDLATQQGHLISACHAADYYLQGKGIPQDVPRG 146
             A N    C   G GR  D   A+ WY LA  +G      + A+  + G G+  D    
Sbjct: 81  LHAINLMGRCCEHGWGRQRDTTMAVYWYRLAASRGLDWGMYNLANLMMSGAGVDVDRATA 140

Query: 147 MAMCTAVAQASSIPAMLQMAGYYEQGRFVPQDLARARAWYQAAAELGSTEAQFHLG-VML 205
           ++     A      ++  +  ++E+G  V  DL RA A Y+ AA  G    QF+   ++L
Sbjct: 141 LSWYRRAADMGHAKSINVLGRFFEEGWEVATDLERAFALYRQAALGGDFRGQFNYSRLLL 200

Query: 206 AQGDGGPADLAAAVNWLE 223
           A+G       A A+ WL 
Sbjct: 201 ARG-----QRALALEWLR 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,795
Number of extensions: 34566
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)