BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0085.p
         (916 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312345|ref|YP_003776437.1| cell wall surface anchor protei...    63   1e-10

>gi|300312345|ref|YP_003776437.1| cell wall surface anchor protein
            [Herbaspirillum seropedicae SmR1]
          Length = 7175

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 80/150 (53%), Gaps = 29/150 (19%)

Query: 554  GSNTLLIKVQDRAGN-DGPVATQSYTLDTTAPTITFSNVALSNDSGTSNTDFITXTSKVS 612
            G+  +L++  D AGN   P A  S+TLDTTAP      ++LSND+G S TD +T  S ++
Sbjct: 5149 GAKNVLMRQVDAAGNASAPTARYSFTLDTTAPVA--PGLSLSNDTGPSKTDRVTNDSTLN 5206

Query: 613  GTTL----TW-----NGVT-LSGSN-------------TLMLRVADAAGNNG-ASTPQSY 648
               L    +W     NG T L+GS              T+++R  D AGN G AS   S+
Sbjct: 5207 VAGLEAGASWQYSTDNGTTWLAGSGSSVRLKGLPDGVTTVIVRQMDVAGNQGPASESFSF 5266

Query: 649  VLDTTAPTITFSTIRFSSDTGASSTDLITN 678
            V D TAP     ++  + DTGAS++D ITN
Sbjct: 5267 VQDATAPAKV--SMVLARDTGASTSDRITN 5294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,337,667
Number of extensions: 90439
Number of successful extensions: 455
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 10
Length of query: 916
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 822
Effective length of database: 1,174,780
Effective search space: 965669160
Effective search space used: 965669160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)