BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0074.p (339 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 676 0.0 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 307 7e-85 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 298 3e-82 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 178 7e-46 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 176 2e-45 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/339 (99%), Positives = 338/339 (99%) Query: 1 VTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLT 60 VTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLT Sbjct: 7 VTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLT 66 Query: 61 SLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGL 120 SLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGL Sbjct: 67 SLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGL 126 Query: 121 TALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKEL 180 TALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKEL Sbjct: 127 TALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKEL 186 Query: 181 GLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELP 240 GLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELP Sbjct: 187 GLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELP 246 Query: 241 KGVLARLRERLARADAGQSTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQ 300 KGVLARLRERLARADAGQ TDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQ Sbjct: 247 KGVLARLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQ 306 Query: 301 GQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI 339 GQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI Sbjct: 307 GQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI 345 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 307 bits (787), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 167/337 (49%), Positives = 231/337 (68%), Gaps = 14/337 (4%) Query: 2 TQRFG--NVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDL 59 T R G ++ A+R ++L I +GE+FGIIGRSGAGKSTL+RTLN+L RP SGR+++DG+D+ Sbjct: 10 TYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDI 69 Query: 60 TSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAEIAAKVEPLLELV 118 T L L R+ +GM+FQHFNLL++++V NI PL++ G+ S+ E AA+V+ LL+LV Sbjct: 70 TGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDELLQLV 129 Query: 119 GLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINK 178 GL A RD+YP+Q+SGGQKQRVGIARALAN P++LL DEATSALDPETT+SIL LL +IN+ Sbjct: 130 GLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLLLEINR 189 Query: 179 ELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHE 238 +LGLTIVLITH+MEVI+ ICDRVAV++ G V EQG V+D+F +P+H VTR+L+ A + Sbjct: 190 KLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSLLTQSHAWD 249 Query: 239 LPKGVLARLRERLARADAGQSTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDE 298 + + R R D L R + G+ QP LS+ + I+ G + Sbjct: 250 AGESLYQR------RPDG-----KLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSR 298 Query: 299 IQGQAFGSLAILANGTQDNINQAMQYLREQGVVVEEL 335 I+ +G L + +G D + Q + L+ + E L Sbjct: 299 IKDTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVL 335 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 298 bits (764), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 161/304 (52%), Positives = 211/304 (69%), Gaps = 5/304 (1%) Query: 6 GNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAA 65 G V+A++ +DL I G IFGIIGRSGAGKS+L+RT+N L RPTSGR+ +D DL +L Sbjct: 53 GPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDET 112 Query: 66 QLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGLTALRD 125 QL RR IGMIFQHFNLL++++V+DNIALPL +AG +A+I +V LL LVGL D Sbjct: 113 QLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKAD 172 Query: 126 RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGLTIV 185 YP ++SGGQKQRVGIARALA+ P++LL DEATSALDPETT+SIL+LLR IN++LG+TI+ Sbjct: 173 SYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITII 232 Query: 186 LITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLA 245 LITH+M VI++I DRV V+E G+V E GEV VF +P+H TRAL+ + H LP+ + Sbjct: 233 LITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAP-LQHGLPQELQQ 291 Query: 246 RLRERLARADAGQSTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFG 305 L+ +A AG+ + + + F G D QP L +L +D IQG G Sbjct: 292 ALQP---QAPAGRH-ERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHG 347 Query: 306 SLAI 309 L + Sbjct: 348 QLVL 351 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 178 bits (451), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 143/233 (61%), Gaps = 3/233 (1%) Query: 1 VTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLT 60 V +RFG+ E ++ + L + GE+ IIG+SG+GKSTL+R +N L G I + G L Sbjct: 9 VKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISVAGAKLG 68 Query: 61 SLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIAL-PLELAGKSKAEIAAKVEPLLELVG 119 + S +LR R +GMIFQ FNL SV N+ + P+ + G S+AE + LE VG Sbjct: 69 A-SELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKANLEKVG 127 Query: 120 LTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKE 179 L D YP Q+SGGQ+QRV IARAL+ P+ LL DE TSALDPE +L ++R + KE Sbjct: 128 LGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMRGLAKE 187 Query: 180 LGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIG 232 G+T++++TH+M +++C+R+ M G+V E G ++F P+ + IG Sbjct: 188 -GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 144/233 (61%), Gaps = 3/233 (1%) Query: 1 VTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLT 60 +T+RFG+ + + + LS+ +G++ IIGRSG+GKST++R +N L G I + G LT Sbjct: 9 ITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITVAGHKLT 68 Query: 61 SLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVE-PLLELVG 119 L E R+ +GM+FQH+NL +V +NI L + K+ E A + +L+ VG Sbjct: 69 H-KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKVLKQVG 127 Query: 120 LTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKE 179 L RD YP Q+SGGQ+QRV IAR+LA +P+V+L DE TSALDPE T +L+++ ++ + Sbjct: 128 LDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVMEELARG 187 Query: 180 LGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIG 232 G+T++L+TH+ME +++ D M G+V E + F P+ R IG Sbjct: 188 -GMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 959,559 Number of extensions: 38120 Number of successful extensions: 586 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 149 Length of query: 339 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 253 Effective length of database: 1,212,660 Effective search space: 306802980 Effective search space used: 306802980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)