BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0063.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312648|ref|YP_003776740.1| MerR family transcription regul...   256   1e-69
gi|300312649|ref|YP_003776741.1| oxidoreductase protein [Herbasp...   253   8e-69
gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase [Her...    58   9e-10
gi|300312019|ref|YP_003776111.1| aryl-alcohol dehydrogenase [Her...    55   5e-09

>gi|300312648|ref|YP_003776740.1| MerR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  256 bits (654), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/127 (99%), Positives = 126/127 (99%)

Query: 145 MTTSLTIAQAAQATGLSVHTLRYYERIGLLDPVERRDNHHRRYTQEDLDWIAFLKKLKAT 204
           MTTSLTIAQAAQATGLSVHTLRYYERIGLLDPVERRDNHHRRYTQEDLDWIAFLKKLKAT
Sbjct: 1   MTTSLTIAQAAQATGLSVHTLRYYERIGLLDPVERRDNHHRRYTQEDLDWIAFLKKLKAT 60

Query: 205 GLPVRAMLRYAELRRAGNTVESVSQRKALLQAHTLCVQHTLAELQENLAVLQHKLVLYEA 264
           GLPVRAMLRYAELRRAGNTVESVSQRKALLQAHTLCVQHTLAELQENLAVLQHKLVLYEA
Sbjct: 61  GLPVRAMLRYAELRRAGNTVESVSQRKALLQAHTLCVQHTLAELQENLAVLQHKLVLYEA 120

Query: 265 LEQQTSA 271
           LEQQ SA
Sbjct: 121 LEQQASA 127


>gi|300312649|ref|YP_003776741.1| oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  253 bits (647), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/122 (98%), Positives = 122/122 (100%)

Query: 1   MSEPLTSHLQAHSPVGTRRLGSNGPLVSALGLGCMGMSDFYAQRDDAESLATIDRALELG 60
           MSEPLTSHLQAHSPVGTRRLGSNGPLVSA+GLGCMGMSDFYAQRDDAESLATIDRALELG
Sbjct: 1   MSEPLTSHLQAHSPVGTRRLGSNGPLVSAIGLGCMGMSDFYAQRDDAESLATIDRALELG 60

Query: 61  INLLDTADMYGPYTNEELLGRAIKGRRDKFFIATKFGIRRDPTDPGARGVDGSPAYIRQA 120
           INLLDTADMYGPYTNEELLGRAIKGRRDKFFIATKFGIRRDP+DPGARGVDGSPAYIRQA
Sbjct: 61  INLLDTADMYGPYTNEELLGRAIKGRRDKFFIATKFGIRRDPSDPGARGVDGSPAYIRQA 120

Query: 121 VE 122
           VE
Sbjct: 121 VE 122


>gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 18 RRLGSNGPLVSALGLGCMGMSDFYAQRDDAESLATIDRALELGINLLDTADMYGPYTNEE 77
          RRLG +   VSAL LG M   D   Q D  ES   +  A E G+N +DTAD+Y    +EE
Sbjct: 4  RRLGKSNLKVSALCLGSMMFGD---QTDLQESGRIVASAREHGVNFIDTADVYTKGKSEE 60

Query: 78 LLGRAIKGRRDKFFIATKFG 97
          ++G+ + G+R ++ +A+K G
Sbjct: 61 IVGKLLAGQRHEWVLASKLG 80


>gi|300312019|ref|YP_003776111.1| aryl-alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 17  TRRLGSNGPLVSALGLGCMGMSDFYAQRDDAESLATIDRALELGINLLDTADMYGPYTNE 76
           +RR G  G  VS +G G   +   +      ++ A +  AL+ G++ +DTAD+YG   +E
Sbjct: 3   SRRFGRTGAQVSEIGFGAWAIGGSWGDVSAQDAKAALHAALDAGVSFIDTADVYGDGRSE 62

Query: 77  ELLGRAIKGR-RDKFFIATKFGIRRDP 102
           +L+ + +K R  ++ F+ATK G R  P
Sbjct: 63  QLIAQVLKERGGERPFVATKAGRRLSP 89


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 851,207
Number of extensions: 34086
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 4
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)