BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0058.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312649|ref|YP_003776741.1| oxidoreductase protein [Herbasp...   330   4e-92
gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase [Her...    73   1e-14

>gi|300312649|ref|YP_003776741.1| oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  330 bits (845), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 157/162 (96%), Positives = 160/162 (98%)

Query: 1   VHPVTALQSEYFLWTRDPEVDVLAACRTLGIGFVAYSPLGRGFLTGAIQRFEDLAEDDFR 60
           VHPVTALQSEY LWTRDPE +VLAACRTLGIGFVAYSPLGRGFLTGAIQRFEDLAEDDFR
Sbjct: 182 VHPVTALQSEYSLWTRDPEAEVLAACRTLGIGFVAYSPLGRGFLTGAIQRFEDLAEDDFR 241

Query: 61  RSNPRFQGENFARNLQLAEKVKEMAGQHGCTPSQLALAWVMAQDPHIVPIPGTKRRRYLE 120
           RSNPRFQGENFARNLQLAEKVKEMAGQHGCTPSQLALAWVMAQDPHIVPIPGTKRRRYLE
Sbjct: 242 RSNPRFQGENFARNLQLAEKVKEMAGQHGCTPSQLALAWVMAQDPHIVPIPGTKRRRYLE 301

Query: 121 DNAGAVGVRLAPEDLQALDAIFPRGAAAGERYTDASMKMLNG 162
           DNAG+VGV+LAPEDLQALDAIFPRGAAAGERYTDASMKMLNG
Sbjct: 302 DNAGSVGVKLAPEDLQALDAIFPRGAAAGERYTDASMKMLNG 343


>gi|300309662|ref|YP_003773754.1| aryl-alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 72.8 bits (177), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 8   QSEYFLWTRDPEVDVLAACRTLGIGFVAYSPLGRGFLTGAIQRFEDLAEDDFR-RSNPRF 66
           Q  Y L  R PEV++L AC   G+G V YSP+ RG LTG  Q  +  A+D    R + R 
Sbjct: 175 QPYYNLLNRQPEVEILPACAHYGLGVVPYSPIARGVLTGKYQPGQKPAQDTRAGRGDKRM 234

Query: 67  QGENF-ARNLQLAEKVKEMAGQHGCTPSQLALAWVMAQDPHIVPIPGTKRRRYLEDNAGA 125
               F   +L +A+++++     G    Q A AWV+A       I G +    +ED   A
Sbjct: 235 METEFREESLLIAQRLQQHCEARGVKLGQFATAWVLANSAISSVIAGPRTLAQMEDYYDA 294

Query: 126 VGVRLAPEDLQALDAIFPRGAAAGERYTD 154
             ++++ E+   +D++   G A+   Y D
Sbjct: 295 AELKISAEEEALVDSLVTPGHASTHGYND 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,601
Number of extensions: 22690
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)