BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0044.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312662|ref|YP_003776754.1| orotidine 5'-phosphate decarbox...   511   e-146

>gi|300312662|ref|YP_003776754.1| orotidine 5'-phosphate
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  511 bits (1317), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/253 (99%), Positives = 251/253 (99%)

Query: 1   VRLDPDLKKFPAELQGKPDAIFEFCRAIIDATAEAACAFKPQIAYFAALGAEEQLERICA 60
           V LDPDLKKFPAELQGKPDAIFEFCRAIIDATAEAACAFKPQIAYFAALGAEEQLERICA
Sbjct: 20  VGLDPDLKKFPAELQGKPDAIFEFCRAIIDATAEAACAFKPQIAYFAALGAEEQLERICA 79

Query: 61  YLRSNYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVTVSPYMGWDSVSPYLEWKDR 120
           YLRSNYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVTVSPYMGWDSVSPYLEWKDR
Sbjct: 80  YLRSNYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVTVSPYMGWDSVSPYLEWKDR 139

Query: 121 GVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTNGQCGLVVGATFPQELAQVR 180
           GVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTNGQCGLVVGATFPQELAQVR
Sbjct: 140 GVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTNGQCGLVVGATFPQELAQVR 199

Query: 181 AIIGDMPLLVPGVGAQGGDVQATVTAGKTAAGTGMMINSSRAILYATPQAGEDFAAGARR 240
           AIIGDMPLLVPGVGAQGGDVQATVTAGKTAAGTGMMINSSRAILYATPQAGEDFAA ARR
Sbjct: 200 AIIGDMPLLVPGVGAQGGDVQATVTAGKTAAGTGMMINSSRAILYATPQAGEDFAAAARR 259

Query: 241 VAIETRDAINRFR 253
           VAIETRDAINRFR
Sbjct: 260 VAIETRDAINRFR 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 772,370
Number of extensions: 30371
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)