BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0042.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312664|ref|YP_003776756.1| glycine rich transmembrane prot...   470   e-134

>gi|300312664|ref|YP_003776756.1| glycine rich transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 283

 Score =  470 bits (1209), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/246 (97%), Positives = 241/246 (97%), Gaps = 3/246 (1%)

Query: 3   MRKLLLSCWL---LALAGPARADDGLVPVPPLSGHVIDQVHLLQAQQRQALEGVLTEIEQ 59
           MRKLLLSCWL   LALAGPARADDGLVPVPPLSGHVIDQVHLLQAQQRQALEGVLTEIEQ
Sbjct: 1   MRKLLLSCWLLAWLALAGPARADDGLVPVPPLSGHVIDQVHLLQAQQRQALEGVLTEIEQ 60

Query: 60  RTGSQIGVLLMSSTAPEAIEQYSIRVADAWKLGRKGIDDGVILIVAKDNPKSLRRLRIEA 119
           RTGSQIGVLLMSSTAPEAIEQYSIRVADAWKLGRKGIDDGVILIVAKDNPKSLRRLRIEA
Sbjct: 61  RTGSQIGVLLMSSTAPEAIEQYSIRVADAWKLGRKGIDDGVILIVAKDNPKSLRRLRIEA 120

Query: 120 GRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPSKRQASTA 179
           GRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPSKRQASTA
Sbjct: 121 GRGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPSKRQASTA 180

Query: 180 QTSDGGGWITLLVVGLFLVVFFSVLLKSRRGSRNNLNDNDWGHGRSTTAGVIIGSILDEA 239
           Q SDGGGWITLLV+GLFLVVFFSVLLKSRRGSRNNLNDNDWG GRSTTAGVIIGSILDEA
Sbjct: 181 QPSDGGGWITLLVIGLFLVVFFSVLLKSRRGSRNNLNDNDWGRGRSTTAGVIIGSILDEA 240

Query: 240 ARQASS 245
           ARQASS
Sbjct: 241 ARQASS 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 694,488
Number of extensions: 26349
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)