BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0038.p (598 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 452 e-128 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 254 2e-68 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 248 1e-66 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 223 2e-59 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 221 1e-58 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/577 (41%), Positives = 366/577 (63%), Gaps = 3/577 (0%) Query: 11 AEKDKRFGLRELMRPLLEKRTAAAEILLASLALQIFALAVPLFSQVIIDKVLNHRNLASL 70 A++ RF + +++ R AE+LL SL LQ+ L P+F QV++DKVL + + +L Sbjct: 141 AQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTL 200 Query: 71 HVLGVAMIVLIGFEAAFSILRARLLDYLSSRIDALLGMRVVRHLLRLPLRYFESRPIGIL 130 +V+ V +I FEA + +R + SS+ID LG R+ HLL LPL YF+ R G Sbjct: 201 NVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDS 260 Query: 131 LSQAKEMESIRQILAGSSFSGLVDLIFTVVFIAVMFSYSTTLTLVVLLAVPVLIVFSLAV 190 +++ +E+E+IR L G++ + ++D++F+ VF+ VM YS +L+L+VL ++PV ++ SL Sbjct: 261 IARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVF 320 Query: 191 RPLMRRTLARKHEMASRAGSVLLELISGIHAIKALAIETAMQSRWQQALSEQVAAARQAS 250 PL+R L K ++ S L+E ++G+ +KA+A+E Q +W + L+ VAA + Sbjct: 321 TPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTT 380 Query: 251 GFSSMNAAFNLLVQRALVLAVLWLGAHLVLDGQLTVGQVIAFQMLALRFIHPVTHVVQVW 310 S + + LV + + + ++WLGA LV+ +++VG+++AF MLA + P+ + Q+W Sbjct: 381 NISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRLAQLW 440 Query: 311 QELQQLSLSSDELGQIMNVPSEDDSGVTRAAAEMRGDVQLVDLGFRYSPQSPVVLDGISL 370 + QQ+ +S L +++ +E TR + G + + FRY P++P V+ G+SL Sbjct: 441 NDFQQIGISMSRLADVLDARTEVAGNRTR-LPRVNGAISFDLVSFRYRPETPEVIRGLSL 499 Query: 371 VAGPGDIIGIVGRSGGGKSTLAKLLHGLYRPTQGKILIDGVDIGHHDLLTLRAQISVVPQ 430 PG++IGIVGRSG GKSTLAKL+ LY G+I +DG DI D +LR QI VV Q Sbjct: 500 QIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQ 559 Query: 431 DIFLFSGSIAENIAISDGHTDLEAIVAAAELADAHTFIMALPQGYDTVVGERGGILLSGG 490 + LFS SI +NIA++D T +E I+ AA+LA AH FI LP+GYDT+VGE+G LSGG Sbjct: 560 ENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGS-GLSGG 618 Query: 491 QRQKIAIARAVYARPRILILDEATSALDHESESRVQGKLREAFPHCTVFVIAHRLSTIRH 550 QRQ+IAIARA+ P ILI DEATSALD+ESE +Q +R+ TV +IAHRLS +R Sbjct: 619 QRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRD 678 Query: 551 ASKILVLEQGRFVEAGKHDELMQ-QDGLYRRLYTMDA 586 A +I+V+E+GR E+G HDEL+ G+Y L+ + A Sbjct: 679 ADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQA 715 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 254 bits (648), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 195/596 (32%), Positives = 308/596 (51%), Gaps = 16/596 (2%) Query: 6 VLPETAEKDKR----FGLRELMRPLLEKRTAAAEILLASLALQIFA--LAVPLFSQVII- 58 + PET E F L +P + LAS A + + +PL V+I Sbjct: 154 ICPETKEAPPSTWALFRLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIP 213 Query: 59 --DKVLNHRNLASLHVLGVAMIVLIGFEAAFSILRARLLDYLSSRIDALLGMRVVRHLLR 116 + +LA+L++ G+ ++ + ++ R +L +S RI A L HLLR Sbjct: 214 FQNGAPIDTHLATLYLSGLLGAAVLAWGLGWA--RTYILALVSERIGADLRTTTYSHLLR 271 Query: 117 LPLRYFESRPIGILLSQ-AKEMESIRQILAGSSFSGLVDLIFTVVFIAVMFSYSTTLTLV 175 L YF + G L+++ E + I L+ +D++ ++ A++ S + L LV Sbjct: 272 LSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIMTAAILISINPWLALV 331 Query: 176 VLLAVPVLIVFSLAVRPLMRRTLARKHEMASRAGSVLLELISGIHAIKALAIETAMQSRW 235 LL +P + VR +R + + S +VL + I GI +KA A E +R+ Sbjct: 332 TLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARF 391 Query: 236 QQALSEQVAAARQASGFSSMNAAFNLLVQRALVLAVLWLGAHLVLDGQLTVGQVIAFQML 295 ++A + + + S+ + +L V G V Q+TVG + AF Sbjct: 392 REANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAY 451 Query: 296 ALRFIHPVTHVVQVWQELQQLSLSSDELGQIMN-VPSEDDSGVTRAAAEMRGDVQLVDLG 354 RF + + ++ Q+ + + + I++ V S + +++G +++ ++G Sbjct: 452 ISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIG 511 Query: 355 FRYSPQSPVVLDGISLVAGPGDIIGIVGRSGGGKSTLAKLLHGLYRPTQGKILIDGVDIG 414 FRY ++ V+ +SL PG++IG+VG SG GKST+ L+ Y ++G I IDGVDI Sbjct: 512 FRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIR 569 Query: 415 HHDLLTLRAQISVVPQDIFLFSGSIAENIAISDGHTDLEAIVAAAELADAHTFIMALPQG 474 + R I +V Q+ FLF G+IAENIA E I+AAA A AH FI+ LPQG Sbjct: 570 SLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQG 629 Query: 475 YDTVVGERGGILLSGGQRQKIAIARAVYARPRILILDEATSALDHESESRVQGKLREAFP 534 YD++VGERG LSGG+RQ+I+IARA+ PRILILDEATS++D +E +Q L Sbjct: 630 YDSLVGERGQA-LSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQ 688 Query: 535 HCTVFVIAHRLSTIRHASKILVLEQGRFVEAGKHDELMQQDGLYRRLYTMDAQQEQ 590 T IAHRLST+R A +++VL++G+ VE G H+ELM ++G Y +LY A+ + Sbjct: 689 GRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQARNPE 744 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 192/542 (35%), Positives = 292/542 (53%), Gaps = 22/542 (4%) Query: 59 DKVLNHRNLASLHVLGVAMIVLIGFEAAFSILRARLLDYLSSRIDALLGMRVVRHLLRLP 118 K +H NL L + GVA I+ + + LR ++ +L R+ A L V H++ Sbjct: 84 SKSASHINLYFLALFGVACILGVA-----TALRFYMVSWLGERVTADLRSAVYAHVVTQS 138 Query: 119 LRYFESRPIGILLSQAKEMESIRQILAGSSFS-GLVDLIFTVVFIAVMFSYSTTLT--LV 175 +FE+ G +LS+ ++ Q L G+S S L + + + ++++F S LT ++ Sbjct: 139 PEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIII 198 Query: 176 VLLAVPVL--IVFSLAVRPLMRRTLARKHEMASRAGSVLLELISGIHAIKALAIETAMQS 233 V+LA VL + + VR L R + R + ++ AG E+++ + ++A E Sbjct: 199 VMLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAG----EILNAMPTVQAFTHEEIEAR 254 Query: 234 RWQQALSEQVAAARQASGFSSMNAAFNLLVQRALVLAVLWLGAHLVLDGQLTVGQVIAFQ 293 R+ Q++ A + S+ +L+ ++ VLWLGAH V++G ++ G++ F Sbjct: 255 RFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFI 314 Query: 294 MLALRFIHPVTHVVQVWQELQQLSLSSDELGQIMNVPSEDDSGV------TRAAAEMRGD 347 + A + + +V + Q+ + +++ L ++ S S + R A Sbjct: 315 LYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALT 374 Query: 348 VQLVDLGFRYSPQSPVVLDGISLVAGPGDIIGIVGRSGGGKSTLAKLLHGLYRPTQGKIL 407 VQ VD + P P L +SL PG+ + IVG SG GK+TL +LL Y P QG+IL Sbjct: 375 VQGVDFHYPSRPGHPS-LTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQIL 433 Query: 408 IDGVDIGHHDLLTLRAQISVVPQDIFLFSGSIAENIAISDGHTDLEAIVAAAELADAHTF 467 +DGVDI + DL LR I +VPQD +FS + ENI ++AAA++A AH F Sbjct: 434 LDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEF 493 Query: 468 IMALPQGYDTVVGERGGILLSGGQRQKIAIARAVYARPRILILDEATSALDHESESRVQG 527 I LP Y +GERG + LSGGQRQ+IAIARA+ P +L+LDEATSALD ESE VQG Sbjct: 494 IERLPGSYACFLGERG-VRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQG 552 Query: 528 KLREAFPHCTVFVIAHRLSTIRHASKILVLEQGRFVEAGKHDELMQQDGLYRRLYTMDAQ 587 L A T VIAHRL+T++ A +I+VLE GR VE+G H EL+ +DGLY L + Q Sbjct: 553 ALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQFQ 612 Query: 588 QE 589 + Sbjct: 613 TQ 614 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 161/505 (31%), Positives = 259/505 (51%), Gaps = 13/505 (2%) Query: 85 AAFSILRARLLDYLSSRIDALLGMRVVRHLLRLPLRYFESRPIGILLSQ-AKEMESIRQI 143 A F+ LR + ++ R + ++V RHL L LR+ +R G + + + + Sbjct: 96 ALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSL 155 Query: 144 LAGSSFSGLVDLIFTVVFIAVMFS-YSTTLTLVVLLAVPVLIVFSLAV---RPLMRRTLA 199 ++ + FS L LI + +A + + Y +++ A+ I+F++ V R RRT+ Sbjct: 156 VSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTM- 214 Query: 200 RKHEMASRAGSVLLELISGIHAIKALAIETAMQSRWQQALSE-QVAAARQASGFSSMNAA 258 +E+ S A + ++ + +K E R+ + L + AA + S S +N Sbjct: 215 --NELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTG 272 Query: 259 FNLLVQRALVLAVLWLGAHLVLDGQLTVGQVIAFQMLALRFIHPVTHVVQVWQELQQLSL 318 + ++ A+ L +LW V+DG +T+G ++ ++ P+ + +++E++Q Sbjct: 273 QSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLA 331 Query: 319 SSDELGQIMNVPSE-DDSGVTRAAAEMRGDVQLVDLGFRYSPQSPVVLDGISLVAGPGDI 377 + L ++ E DS + ++ + F Y ++ D + G Sbjct: 332 DMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYERNRQILFD-VDFTVQAGTT 390 Query: 378 IGIVGRSGGGKSTLAKLLHGLYRPTQGKILIDGVDIGHHDLLTLRAQISVVPQDIFLFSG 437 +VG SG GKSTL++LL+ Y G I IDG D+ +LR I +VPQD LF+ Sbjct: 391 TAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFND 450 Query: 438 SIAENIAISDGHTDLEAIVAAAELADAHTFIMALPQGYDTVVGERGGILLSGGQRQKIAI 497 +I NIA E IVAAA+ A H FI +LP GY ++VGERG + LSGG++Q++AI Sbjct: 451 TIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERG-LKLSGGEKQRVAI 509 Query: 498 ARAVYARPRILILDEATSALDHESESRVQGKLREAFPHCTVFVIAHRLSTIRHASKILVL 557 AR + P ILI DEATSALD +E +Q +L E T VIAHRLSTI +A +ILVL Sbjct: 510 ARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVL 569 Query: 558 EQGRFVEAGKHDELMQQDGLYRRLY 582 + GR VE G H L+ GLY +++ Sbjct: 570 DHGRIVERGTHAGLLMAGGLYAQMW 594 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 180/565 (31%), Positives = 288/565 (50%), Gaps = 51/565 (9%) Query: 50 VPLFSQVIIDKVLNHRNLASLHVLGVAMIVLIGFEAAFSILRARLLDYLSSRIDALLGMR 109 VP QV++DK + SL ++ VA+I + + + ++ ++S+RI L + Sbjct: 37 VPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQ 96 Query: 110 VVRHLLRLPLRYFESRPIGILLSQAKEMESIRQILAGSSFSGLVDLIFTVVFIAVMFSYS 169 + +L LPL ++ + +G +++ M ++QI +D++ T VF +++ S Sbjct: 97 MFARMLDLPLHFYATNTVGKVINSM--MFEVQQI---------IDMV-TKVFTSILRS-- 142 Query: 170 TTLTLVVLLAVPVLIVFSLAV--------------------RPLMRRTLARKHEMASRAG 209 LT++ LLA + + + L + + L R +LA EM Sbjct: 143 -ALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAEMTQ--- 198 Query: 210 SVLLELISGIHAIKALAIETAMQSRW-QQALSEQVAAARQASGFSSMNAAFNLLVQRA-- 266 V+ E IK + + R+ ++A + + R + FSS L+ A Sbjct: 199 -VIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLMTATAVA 257 Query: 267 --LVLAVLWLGAHLVLDGQLTVGQVIAFQMLALRFIHPVTHVVQVWQELQQLSLSSDELG 324 +V+A++ G +GQ+TVG ++F L + P+ + ++ LQ+ +++E+ Sbjct: 258 VVIVMALIQSG-----NGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEVY 312 Query: 325 QIMNVPSEDDSGVTRAAAEMRGDVQLVDLGFRYSPQSPVVLDGISLVAGPGDIIGIVGRS 384 ++++ +E +G A G + V++GF Y + L I+L G+ I VG S Sbjct: 313 KLIDKTTERITG-EALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGMS 371 Query: 385 GGGKSTLAKLLHGLYRPTQGKILIDGVDIGHHDLLTLRAQISVVPQDIFLFSGSIAENIA 444 GGGKSTL L+ G Y + G+I +DG DI L +LR QI++V Q+ LF ++A NIA Sbjct: 372 GGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAANIA 431 Query: 445 ISDGHTDLEAIVAAAELADAHTFIMALPQGYDTVVGERGGILLSGGQRQKIAIARAVYAR 504 D + D + AA E A + LP+G T +G+ G LSGGQRQ++AIARA+Y Sbjct: 432 YGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGS-RLSGGQRQRVAIARAIYKD 490 Query: 505 PRILILDEATSALDHESESRVQGKLREAFPHCTVFVIAHRLSTIRHASKILVLEQGRFVE 564 ILILDEATSALD ESE VQ L T FVIAHRLSTI A +I+VL G+ E Sbjct: 491 APILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAE 550 Query: 565 AGKHDELMQQDGLYRRLYTMDAQQE 589 G H L++Q+G+Y LY + Q+ Sbjct: 551 IGTHQALLEQEGVYANLYRLQFSQQ 575 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,517,781 Number of extensions: 57142 Number of successful extensions: 662 Number of sequences better than 1.0e-08: 107 Number of HSP's gapped: 551 Number of HSP's successfully gapped: 115 Length of query: 598 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 507 Effective length of database: 1,188,985 Effective search space: 602815395 Effective search space used: 602815395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)