BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0026.p (360 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312674|ref|YP_003776766.1| two-component system transcript... 722 0.0 gi|300312803|ref|YP_003776895.1| two component sensor histidine ... 157 1e-39 gi|300311807|ref|YP_003775899.1| light-regulated signal transduc... 126 3e-30 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 78 1e-15 gi|300311949|ref|YP_003776041.1| two component response regulato... 73 4e-14 >gi|300312674|ref|YP_003776766.1| two-component system transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/360 (100%), Positives = 360/360 (100%) Query: 1 VKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLVHEVALAFIDVQMPDMDGF 60 VKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLVHEVALAFIDVQMPDMDGF Sbjct: 13 VKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLVHEVALAFIDVQMPDMDGF 72 Query: 61 ELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEPHILRNKAEVFFQ 120 ELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEPHILRNKAEVFFQ Sbjct: 73 ELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEPHILRNKAEVFFQ 132 Query: 121 LYRQKQQLALELRERTETLRLNEMFVAILGHDLRNPLSAVMMAATLLQRTYKEEVAQKAS 180 LYRQKQQLALELRERTETLRLNEMFVAILGHDLRNPLSAVMMAATLLQRTYKEEVAQKAS Sbjct: 133 LYRQKQQLALELRERTETLRLNEMFVAILGHDLRNPLSAVMMAATLLQRTYKEEVAQKAS 192 Query: 181 QQILNGGKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIER 240 QQILNGGKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIER Sbjct: 193 QQILNGGKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIER 252 Query: 241 RIEGDDNGYWDGDRLAQVAANLLGNALQHGEPGHPICIGIDGRSEHEVVMVIANRGVIPA 300 RIEGDDNGYWDGDRLAQVAANLLGNALQHGEPGHPICIGIDGRSEHEVVMVIANRGVIPA Sbjct: 253 RIEGDDNGYWDGDRLAQVAANLLGNALQHGEPGHPICIGIDGRSEHEVVMVIANRGVIPA 312 Query: 301 DLLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQTMVTVRLPRR 360 DLLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQTMVTVRLPRR Sbjct: 313 DLLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQTMVTVRLPRR 372 >gi|300312803|ref|YP_003776895.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 160/290 (55%), Gaps = 20/290 (6%) Query: 89 RLFKGYESGAVDFLYKPIEPHILRNKAEVFFQLYRQK------------QQLALELRERT 136 RL G+ + Y+ + +LR A+ + + Y Q LA L T Sbjct: 91 RLLSGFSVEQLASEYRALRSSVLRLWAKEWKEGYETNVDDITRFNEAIDQALAESLARYT 150 Query: 137 ETL-RLNEMFVAILGHDLRNPLSAVMMAATLLQRTYK-EEVAQKASQQILNGGKRMAKLI 194 + L + +F+AILGHDLRNPL A + A ++ ++ +K + +I N G+RM+KL+ Sbjct: 151 KLLDQSRNLFLAILGHDLRNPLGATIHGAQIMLLAEDIDDRHRKIAARIYNSGQRMSKLV 210 Query: 195 ENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIEGDDNGYWDGDR 254 ++LD R L G+PL +SA +G+I +RV+ E ++P VI + G+ NG WD +R Sbjct: 211 ADLLDYTRTHLGSGLPLEISSANVGDIAQRVIDEISTSHPDKVITLKTSGELNGEWDKER 270 Query: 255 LAQVAANLLGNALQHGEPGHPICIGIDGRSEHEVVMVIANRG-VIPADLLPVIFDPF--- 310 +AQ +NLLGNA+QHG G I + I S EV + I N+G +IP + L IFDP Sbjct: 271 IAQAISNLLGNAVQHGATGEAIKVEISA-SRGEVHVAINNKGPLIPEEKLHTIFDPLVRL 329 Query: 311 -RGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQTMVTVRLPR 359 G +G+ +GLGL+I +++ AHGGS++ SS T T+RLPR Sbjct: 330 VANGGEGSGQGGSMGLGLYIVREVASAHGGSVTASSSTAEGTTFTIRLPR 379 >gi|300311807|ref|YP_003775899.1| light-regulated signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 19/245 (7%) Query: 126 QQLALELRE---RTETL--RLNEMFVAILGHDLRNPLSAVMMAATLLQRTYKEEVAQKAS 180 QL L+L+E E L R E +A LGHDLR+PL A+MMAA +++ + S Sbjct: 491 SQLRLDLQEVALTNENLVKRARETLLATLGHDLRDPLQAIMMAARMIEVREHSPSSSNLS 550 Query: 181 QQILNGGKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIER 240 ++I + RM +LI +LD++R + G+ + R + ++ +V E + YP + I Sbjct: 551 KRISSSSSRMHRLISQVLDISRLQSGMGLDIQRRPVDVRKMVSEIVSEARMAYPDNEI-- 608 Query: 241 RIEGDDNG--YWDGDRLAQVAANLLGNALQHGEPGHPICIGIDGRSEHEVVMVIANRG-V 297 +E +D G DGDR++QV +NL+ N HGE G P + I R E + + ++N G Sbjct: 609 ILEAEDCGEIALDGDRISQVVSNLISNTRHHGEIGKPSTL-IVFRREDVLTIAVSNHGPA 667 Query: 298 IPADLLPVIFDPFR----GGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQTMV 353 IP + +F P++ G +R GLGLGL+I +IV HGG I++S D+ + T Sbjct: 668 IPEPVRSNLFKPYKKESLGNQRNT---RGLGLGLYIVSEIVHGHGGKIAVSCDNNIITF- 723 Query: 354 TVRLP 358 TV LP Sbjct: 724 TVTLP 728 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 137 ETLRLNEMFVAILGHDLRNPLSAVMMAATLLQRTYK-EEVAQKASQQILNGGKRMAKLIE 195 E+ RL ++ + HDLR PL++++ +A +L + ++ A+ ++ I ++M L+ Sbjct: 703 ESERLRNSLLSAISHDLRTPLTSLVGSADVLAANARLDDDARAMARTISEQSQKMVGLMN 762 Query: 196 NMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIEGD-DNGYWDGDR 254 N+LD+AR + AG + L R L E+ ++ G ++ RI + D Sbjct: 763 NLLDMARLQ-AGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPLLRVDAVL 821 Query: 255 LAQVAANLLGNALQHGEPGHPICIGI-----DGRSEHEVVMVIANRGVIPADLLPVIFDP 309 L +V ANL+ NA+++ PG PI I DG + +V ++ RG P + F+ Sbjct: 822 LERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVCVMDQGRG-FPPTMTQHAFEK 880 Query: 310 FRGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQ-TMVTVRLP 358 F G+ E+ G+GLGL I + I++AH G I ++ + Q V LP Sbjct: 881 FTRGDNESA-TPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLP 929 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 3 FLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLVHEVALAFIDVQMPDMDGFEL 62 L+VDD+ +NL LS L +L+A GL ALE L L +D MP +DGFE Sbjct: 11 VLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDAMMPGIDGFET 70 Query: 63 AELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEP 108 I+ R +VP++F+T G+ + + +G+E G +D++ KPI P Sbjct: 71 CRRIKQVRRVAHVPVVFMT-GLSETEHVVRGFEVGGIDYVTKPIRP 115 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 864,811 Number of extensions: 32462 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 283 Number of HSP's successfully gapped: 31 Length of query: 360 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 274 Effective length of database: 1,212,660 Effective search space: 332268840 Effective search space used: 332268840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)