BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0019.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312680|ref|YP_003776772.1| two component response regulato... 437 e-124 gi|300309981|ref|YP_003774073.1| two component response regulato... 200 9e-53 gi|300313818|ref|YP_003777910.1| two component transcription reg... 165 3e-42 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 162 2e-41 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 159 2e-40 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 437 bits (1124), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRR 60 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRR Sbjct: 4 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRR 63 Query: 61 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ 120 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ Sbjct: 64 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ 123 Query: 121 LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFT 180 LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFT Sbjct: 124 LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFT 183 Query: 181 INAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 INAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA Sbjct: 184 INAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 220 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 200 bits (508), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 110/219 (50%), Positives = 143/219 (65%), Gaps = 7/219 (3%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGIDGFE 56 LL EDD VL DGL+R L G+ V NG +A S Q F+ +L+LD+GLP + G E Sbjct: 4 LLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFD--LLILDLGLPKMSGLE 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA- 115 VLRR+RA + PVL+LTA D++ RV GL+LGADDY+ KPFA EL AR++AL RR A Sbjct: 62 VLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAG 121 Query: 116 PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 175 P + G LS D + A I + +ELS RE +LE L+Q R+VSK+Q++D + W Sbjct: 122 GGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEW 181 Query: 176 GEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEK 214 GE+ + NA+EVYV R+R KI GV I T+RG GY LEK Sbjct: 182 GEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 165 bits (418), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/223 (42%), Positives = 136/223 (60%), Gaps = 10/223 (4%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGIDGFE 56 LLVED L+ L++ + TV +NG DA L+Q + A+++LD+ LP +DG E Sbjct: 4 LLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDY--ALVILDLTLPRMDGME 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 VL+RMRA GN TPVL+LTAR + DRV GL +GADDYL KPF EL AR+KAL+RRS Sbjct: 62 VLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQN 121 Query: 117 QPA-QLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 175 A ++ G LS D ++ G + L+ RE VLE L+ V K+++ V Sbjct: 122 NEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFTL 181 Query: 176 GEDFTINAVEVYVSRIRLKIADSG---VAIRTIRGFGYMLEKS 215 ++ +++A+E+Y+ R+R K+ G V I T+RG GY+L+ + Sbjct: 182 EDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQAT 224 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 162 bits (410), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 3/219 (1%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGN--DALSQRFNAAVLVLDIGLPGIDGFEVL 58 LL+ED+P L L ++L H F V +G D + + N V++LD+ LP + G VL Sbjct: 4 LLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGKNVL 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP-Q 117 RR+R N PV++LTA +I ++V L GADDYLVKPF ELVARIK L+RR P + Sbjct: 64 RRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQTPDK 123 Query: 118 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 A++ G L D+ T++ + G + L RE VLE L+ + VSK ++ V E Sbjct: 124 AAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFSLSE 183 Query: 178 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSE 216 + + +A+EVY+SR+R K+ SG AI T+RG GY+L + + Sbjct: 184 EPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 137/216 (63%), Gaps = 6/216 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA---LSQRFNAAVLVLDIGLPGIDGFEV 57 LLVED + + + LN G TV +NG A LS+ ++ +L+LD+ LP DGF + Sbjct: 4 LLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESYD--LLILDVMLPQQDGFSL 61 Query: 58 LRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ 117 L+++R G++TPVL+LTA + +RV L+LGADDYLVKPF EL ARI+ L+RRS + Sbjct: 62 LQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGGE 121 Query: 118 PAQ-LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 176 L LS+D ++ A +DG+ IEL+ RE T+LE + R+ +K +++D + Sbjct: 122 STNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTVD 181 Query: 177 EDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYML 212 ++ + N+VE YV+R+R K+A + IRT+RG GY L Sbjct: 182 DNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 687,921 Number of extensions: 28709 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 38 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)