BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0015.p (272 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate A... 530 e-152 gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate A... 207 9e-55 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 102 2e-23 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 95 7e-21 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 91 1e-19 >gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 284 Score = 530 bits (1365), Expect = e-152, Method: Compositional matrix adjust. Identities = 272/272 (100%), Positives = 272/272 (100%) Query: 1 MDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPFFFSQPSLIVAQI 60 MDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPFFFSQPSLIVAQI Sbjct: 13 MDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPFFFSQPSLIVAQI 72 Query: 61 YDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIAN 120 YDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIAN Sbjct: 73 YDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIAN 132 Query: 121 SIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASR 180 SIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASR Sbjct: 133 SIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASR 192 Query: 181 RQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVF 240 RQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVF Sbjct: 193 RQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVF 252 Query: 241 AAMIVLAVVALAADWLLHALERRLLKWRPQAF 272 AAMIVLAVVALAADWLLHALERRLLKWRPQAF Sbjct: 253 AAMIVLAVVALAADWLLHALERRLLKWRPQAF 284 >gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 207 bits (526), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 112/266 (42%), Positives = 168/266 (63%), Gaps = 23/266 (8%) Query: 25 RIAILVIVLGGWEVCARIGWIDP---FFFSQPSLIVAQIYDWMVEGTSQ----------- 70 ++ +L IVL W V R +P FFF +P + +I++W G+ Sbjct: 16 QLMVLAIVLVVWHVATR----NPQTAFFFGEPLKVAQRIWEWFTVGSGSLEVGIGDTTFF 71 Query: 71 -----GPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIANSIPRV 125 +++ +L+TL ETVL F+IG+V G+ G+ L + S + Y++ ANS+PRV Sbjct: 72 TLSFPAEIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDPYVKAANSMPRV 131 Query: 126 VLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASRRQVTM 185 +L IF + FGLG+ SKVALAV +VFF+VF N +QGV+E ++ANA++LGA+ RQ+ Sbjct: 132 ILAPIFAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANARQLLR 191 Query: 186 AVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAAMIV 245 V +PSA SW+ +SLH S G A VGAVVGE+LGS +G+G LI A+G F+ + VFA ++V Sbjct: 192 TVYLPSATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTFDINTVFAGIVV 251 Query: 246 LAVVALAADWLLHALERRLLKWRPQA 271 L + AL D + +E+RL+KW+P++ Sbjct: 252 LTIFALVLDLAVGVIEKRLMKWQPKS 277 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 6/240 (2%) Query: 28 ILVIVLGGWEVCARIGWIDPFFFSQPSLIVAQIYDWMVEGTSQGPLWTQVLVTLEETVLG 87 +L+++LG W+ + + F F P I+ + D+ GP+ L T T++G Sbjct: 21 LLLVILGVWQFICSVWQVSDFIFPSPGSILQAMVDY------AGPITEHALSTFWVTMVG 74 Query: 88 FLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAV 147 F I V GV G V+G + +L + N++P+ + V+ FG+G + A Sbjct: 75 FAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTAF 134 Query: 148 VMVFFVVFANAFQGVREADRYMIANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFA 207 ++ FF + N G+ + + ++LGA R + + V +P ++ + ASL V+ A Sbjct: 135 LISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVAITLA 194 Query: 208 LVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKW 267 VG+ V E S QGIG L+ +A + FA ++V+ +A+A L +E+R W Sbjct: 195 FVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTTGW 254 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 94.7 bits (234), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 132/268 (49%), Gaps = 17/268 (6%) Query: 15 RARKQLVIGLRIAILVIVLGGWEVCARIGWIDPFFFSQPSLIVAQ---------IYD--- 62 + + + GL + I+VI L WE +R GWI+P P ++ + YD Sbjct: 4 KNKGSFLQGLLVPIIVIAL--WEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEA 61 Query: 63 --WMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIAN 120 W+ S G L + +L V GFLIG+ + G+++G ++ + + +L +Q+ Sbjct: 62 GSWLAWAFS-GELVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIR 120 Query: 121 SIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASR 180 IP + + ++ FGLG + L + FF V N GVR+ D + A+ LGAS+ Sbjct: 121 PIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQ 180 Query: 181 RQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVF 240 + + V++P+A+ +IL+ + + G A + +V E + G+G I A+ F + + Sbjct: 181 STLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKII 240 Query: 241 AAMIVLAVVALAADWLLHALERRLLKWR 268 A MI + ++ LA D + L +L+W Sbjct: 241 AGMITIGLLGLAIDLGMSRLNNYMLRWH 268 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 118/245 (48%) Query: 24 LRIAILVIVLGGWEVCARIGWIDPFFFSQPSLIVAQIYDWMVEGTSQGPLWTQVLVTLEE 83 + IA +++L W + A+ GW+ F P+ ++ +G + L V +L Sbjct: 46 ISIAAGIVILALWWLIAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLR 105 Query: 84 TVLGFLIGSVAGVIAGIVLGRNKLLSDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKV 143 + +I + G+ G+++G N+ + V I+ +P + + +I G+G ASK+ Sbjct: 106 ILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKI 165 Query: 144 ALAVVMVFFVVFANAFQGVREADRYMIANAQILGASRRQVTMAVVIPSALSWILASLHVS 203 L + +F V +A GVR + + A LGA+R Q+ VV+PSAL IL + ++ Sbjct: 166 TLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIA 225 Query: 204 FGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAAMIVLAVVALAADWLLHALERR 263 G V E + S +GIG +I +A VF + ++A A A + + LER Sbjct: 226 LGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERA 285 Query: 264 LLKWR 268 L+ W+ Sbjct: 286 LVPWK 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 721,393 Number of extensions: 28315 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 13 Length of query: 272 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 188 Effective length of database: 1,222,130 Effective search space: 229760440 Effective search space used: 229760440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)