BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0014.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 566 e-163 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 286 1e-78 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 199 1e-52 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 180 1e-46 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 179 1e-46 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 566 bits (1459), Expect = e-163, Method: Compositional matrix adjust. Identities = 275/275 (100%), Positives = 275/275 (100%) Query: 1 MNAINQHAFTPAGQAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP 60 MNAINQHAFTPAGQAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP Sbjct: 1 MNAINQHAFTPAGQAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGP 60 Query: 61 TGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGP 120 TGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGP Sbjct: 61 TGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGP 120 Query: 121 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP 180 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP Sbjct: 121 LFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEP 180 Query: 181 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI 240 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI Sbjct: 181 FSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPI 240 Query: 241 DLPRPRVMEEVRYEQRFIDISRRIWADLREEVHIA 275 DLPRPRVMEEVRYEQRFIDISRRIWADLREEVHIA Sbjct: 241 DLPRPRVMEEVRYEQRFIDISRRIWADLREEVHIA 275 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 286 bits (732), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 136/257 (52%), Positives = 190/257 (73%), Gaps = 3/257 (1%) Query: 19 TPAIELRNVSCRFITADGRAT--VALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 76 TPA++ N++C F++ D R+ A+ + +++A GEFV+VVGPTGCGKST L++ GLL Sbjct: 2 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 61 Query: 77 KPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADE 136 +P+ G V+V G+ + GI+ R G++FQ +A+ PWRS +NV AG +RG + A L ++ Sbjct: 62 QPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQ 121 Query: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 W+ RVGL FGD YPHQLSGGMRKRVALAQT I P+I+LMDEPFSALD+QTR LM++E+ Sbjct: 122 WLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEV 181 Query: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLK-SVYPIDLPRPRVMEEVRYEQ 255 L LW+A +V+F+THDL+EAIA++D+V VL A P T + IDLPRPR + E+R Sbjct: 182 LDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHP 241 Query: 256 RFIDISRRIWADLREEV 272 RF+++ ++IW LR+EV Sbjct: 242 RFVELHQQIWDVLRDEV 258 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 199 bits (507), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 1/228 (0%) Query: 19 TPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKP 78 +P I ++ V F T D R VAL+D ++ + G+FV ++GP+GCGKST L+ I G P Sbjct: 7 SPRIRIQGVHKVFKT-DDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 Query: 79 TLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWI 138 + G++ + V+ P G VFQ A+FPW +V +NVA G +G PKA+ H + + Sbjct: 66 SSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLL 125 Query: 139 RRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLR 198 ++GL F +P LSGGMR+RVA+A+ I+LMDEPF ALD TR +QDELLR Sbjct: 126 DKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLR 185 Query: 199 LWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPR 246 +W ++VFVTH +EEAI LAD++ V+T RP T+K ++LPR R Sbjct: 186 IWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLR 233 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 125/193 (64%) Query: 42 LRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVF 101 + +F+ +A GE VA+VGP+GCGKST L + GL KP+ G V GQ + G P +F Sbjct: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMF 77 Query: 102 QNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKR 161 Q +A++PW ++++NVA F+ K +A A W+ V L F +YPHQ+SGGMR+R Sbjct: 78 QENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQR 137 Query: 162 VALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALA 221 ALA+ FI+ P+ LL+DEPF ALD TR +QD L L +VV VTHD++EA+ LA Sbjct: 138 AALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLA 197 Query: 222 DKVYVLTARPATL 234 D+++V + RPA + Sbjct: 198 DRIFVFSPRPAKV 210 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 145/252 (57%), Gaps = 4/252 (1%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 +++ N S F D + AL S+ + G FV +G +GCGKST L+ + G L + G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 82 EVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRV 141 + + GQPV+G G VFQ D++ PW+SV++NVA G F G K+ + A E +R V Sbjct: 62 RISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLV 121 Query: 142 GLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWS 201 GL F P++LSGGMR+RV LA+ +P+ILLMDEPF ALD TR MQ+ L+ +W+ Sbjct: 122 GLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWA 181 Query: 202 AHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFIDIS 261 V F+TH +EEA+ L +V V++ RP + + + D R E R I + Sbjct: 182 RTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFETDFVRRFA---AGCEARAIK-T 237 Query: 262 RRIWADLREEVH 273 +A+LREE+ Sbjct: 238 EPAFAELREEIR 249 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 896,362 Number of extensions: 37601 Number of successful extensions: 516 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 142 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)