BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0013.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A... 560 e-161 gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A... 407 e-115 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 170 1e-43 >gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 560 bits (1443), Expect = e-161, Method: Compositional matrix adjust. Identities = 273/275 (99%), Positives = 274/275 (99%) Query: 1 VELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVILSQVPGEVELVSTK 60 VELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVIL QVPGEVELVSTK Sbjct: 63 VELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVILGQVPGEVELVSTK 122 Query: 61 AAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQ 120 AAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQ Sbjct: 123 AAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQ 182 Query: 121 GRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKED 180 GRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKED Sbjct: 183 GRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKED 242 Query: 181 AQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALSNSLPMYSQDGKMPKGG 240 AQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQAL+NSLPMYSQDGKMPKGG Sbjct: 243 AQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALTNSLPMYSQDGKMPKGG 302 Query: 241 PQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK 275 PQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK Sbjct: 303 PQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK 337 >gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 407 bits (1045), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/275 (70%), Positives = 231/275 (84%) Query: 1 VELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVILSQVPGEVELVSTK 60 VELQSQPAGVDAENELLAGAVQAVVG+YDHSIDLQ+KGKE+T+I L VPG +E+V Sbjct: 79 VELQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSIAQLLLVPGGMEMVRAD 138 Query: 61 AAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQ 120 A +SMAD KGKTLGVTGLGSS++F+ QYLA+R G+ + +S+LPVGA NT IAAMKQ Sbjct: 139 LADSVRSMADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGDYSILPVGAGNTLIAAMKQ 198 Query: 121 GRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKED 180 R+D TTEPT S LL +G A+VLVD+ +V+GT ALGGLYPASS+YV RSW+NSHK + Sbjct: 199 KRVDVAWTTEPTTSILLASGAAKVLVDMSSVDGTKAALGGLYPASSLYVHRSWMNSHKAE 258 Query: 181 AQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALSNSLPMYSQDGKMPKGG 240 +QKLAR FVKTLR+IQTH+AE IADKMPKDYYG +K +Y+QAL SLPMYS DGKMP GG Sbjct: 259 SQKLARVFVKTLRYIQTHSAEDIADKMPKDYYGGSKAIYVQALKASLPMYSPDGKMPAGG 318 Query: 241 PQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK 275 P+ VL V++GFNPN+KGK++DLSKTYT+EFV+ VK Sbjct: 319 PEQVLKVMAGFNPNIKGKNIDLSKTYTNEFVDQVK 353 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 170 bits (430), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/271 (33%), Positives = 147/271 (54%) Query: 1 VELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVILSQVPGEVELVSTK 60 VE+ G A ++ G+ V G Y+H+I++Q K + I A V+ + P V V+ K Sbjct: 67 VEISDFAGGAKALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAVNNK 126 Query: 61 AAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQ 120 P+++++AD KGK +GVT GSST+ + Y+ ++ G+ S + VGA I+A++ Sbjct: 127 TMPNYKTVADLKGKKIGVTAPGSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRS 186 Query: 121 GRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKED 180 G+IDA +P S L ++ + + + D RT++ T GG PA+++Y +++ + Sbjct: 187 GQIDAIANLDPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFIQKYPNT 246 Query: 181 AQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALSNSLPMYSQDGKMPKGG 240 Q L A V+ L++IQ I +P+ Y ++ LYI A S DG P GG Sbjct: 247 TQALTNAMVRALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDGYFPPGG 306 Query: 241 PQTVLAVLSGFNPNVKGKHVDLSKTYTDEFV 271 P T L L F P++ K +DLSKT+T+ FV Sbjct: 307 PDTALRTLKAFEPSLADKQIDLSKTFTNSFV 337 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 823,938 Number of extensions: 32049 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 3 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)