BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0012.p (332 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A... 568 e-163 gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A... 353 9e-99 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 148 5e-37 >gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 568 bits (1464), Expect = e-163, Method: Compositional matrix adjust. Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 1 MRDDFCVWPALNGRLRRRLLTLGITVSTAITACALGLAAPQARAADKIIIMVGGINKLIY 60 MRDDFCVWPALNGRLRRRLLTLGITVSTAITACALGLAAPQARAADKIIIMVGGINKLIY Sbjct: 1 MRDDFCVWPALNGRLRRRLLTLGITVSTAITACALGLAAPQARAADKIIIMVGGINKLIY 60 Query: 61 LPPKLAESLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVT 120 LPPKLAESLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVT Sbjct: 61 LPPKLAESLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVT 120 Query: 121 SIAQLLLVPGGMEMVRADLADSVRSMADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGD 180 SIAQLLLVPGGMEMVRADLADSVRSMADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGD Sbjct: 121 SIAQLLLVPGGMEMVRADLADSVRSMADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGD 180 Query: 181 YSILPVGAGNTLIAAMKQKRVDVAWTTEPTTSILLASGAAKVLVDMSSVDGTKAALGGLY 240 YSILPVGAGNTLIAAMKQKRVDVAWTTEPTTSILLASGAAKVLVDMSSVDGTKAALGGLY Sbjct: 181 YSILPVGAGNTLIAAMKQKRVDVAWTTEPTTSILLASGAAKVLVDMSSVDGTKAALGGLY 240 Query: 241 PASSLYVHRSWMNSHKAESQKLARVFVKTLRYIQTHSAEDIA 282 PASSLYVHRSWMNSHKAESQKLARVFVKTLRYIQTHSAEDIA Sbjct: 241 PASSLYVHRSWMNSHKAESQKLARVFVKTLRYIQTHSAEDIA 282 >gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 353 bits (907), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 181/272 (66%), Positives = 215/272 (79%), Gaps = 6/272 (2%) Query: 11 LNGRLRRRLLTLGITVSTAITACALGLAAPQARAADKIIIMVGGINKLIYLPPKLAESLG 70 +N +R+ LL+L AI + L A A AA KI IMVGGINK++YLP KLAE LG Sbjct: 1 MNKHIRQGLLSL------AIASTVLAGAPAPAWAAAKITIMVGGINKMVYLPAKLAEQLG 54 Query: 71 YFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSIAQLLLVPG 130 YFKEEGLDVELQSQPAGVDAENELLAGAVQAVVG+YDHSIDLQ+KGKE+T+I L VPG Sbjct: 55 YFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVILGQVPG 114 Query: 131 GMEMVRADLADSVRSMADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGDYSILPVGAGN 190 +E+V A +SMAD KGKTLGVTGLGSS++F+ QYLA+R G+ + +S+LPVGA N Sbjct: 115 EVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADN 174 Query: 191 TLIAAMKQKRVDVAWTTEPTTSILLASGAAKVLVDMSSVDGTKAALGGLYPASSLYVHRS 250 T IAAMKQ R+D TTEPT S LL +G A+VLVD+ +V+GT ALGGLYPASS+YV RS Sbjct: 175 TFIAAMKQGRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRS 234 Query: 251 WMNSHKAESQKLARVFVKTLRYIQTHSAEDIA 282 W+NSHK ++QKLAR FVKTLR+IQTH+AE IA Sbjct: 235 WLNSHKEDAQKLARAFVKTLRFIQTHTAEQIA 266 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 148 bits (374), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 132/249 (53%) Query: 36 GLAAPQARAADKIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVELQSQPAGVDAENELL 95 G A QA K+ I VGG N YLP +AE LGYFK+EGL VE+ G A ++ Sbjct: 24 GSAGAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDEGLQVEISDFAGGAKALQAMV 83 Query: 96 AGAVQAVVGYYDHSIDLQSKGKEVTSIAQLLLVPGGMEMVRADLADSVRSMADLKGKTLG 155 G+ V G Y+H+I++Q+K + + + P + V + +++ADLKGK +G Sbjct: 84 GGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAVNNKTMPNYKTVADLKGKKIG 143 Query: 156 VTGLGSSSSFIAQYLANRAGLKAGDYSILPVGAGNTLIAAMKQKRVDVAWTTEPTTSILL 215 VT GSS+S +A Y+ +AGLK D S + VGA I+A++ ++D +P S+L Sbjct: 144 VTAPGSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRSGQIDAIANLDPVISMLE 203 Query: 216 ASGAAKVLVDMSSVDGTKAALGGLYPASSLYVHRSWMNSHKAESQKLARVFVKTLRYIQT 275 S K + D ++ T GG PA++LY +++ + +Q L V+ L++IQ Sbjct: 204 QSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFIQKYPNTTQALTNAMVRALKWIQK 263 Query: 276 HSAEDIAXA 284 DI A Sbjct: 264 AGPSDIIKA 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 872,656 Number of extensions: 31613 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 4 Length of query: 332 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 246 Effective length of database: 1,212,660 Effective search space: 298314360 Effective search space used: 298314360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)