BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0010.p (459 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 910 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 268 5e-73 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 198 8e-52 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 182 5e-47 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 178 1e-45 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/459 (99%), Positives = 458/459 (99%) Query: 1 MIDSLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDG 60 MIDSLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDG Sbjct: 1 MIDSLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDG 60 Query: 61 APVVSVPPEALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNG 120 APVVSVPP ALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNG Sbjct: 61 APVVSVPPAALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNG 120 Query: 121 KPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVL 180 KPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVL Sbjct: 121 KPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVL 180 Query: 181 GLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRF 240 GLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRF Sbjct: 181 GLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRF 240 Query: 241 VADAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEA 300 VADAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEA Sbjct: 241 VADAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEA 300 Query: 301 SDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNL 360 SDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNL Sbjct: 301 SDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNL 360 Query: 361 IDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSG 420 IDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSG Sbjct: 361 IDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSG 420 Query: 421 LGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLPALQS 459 LGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLPALQS Sbjct: 421 LGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLPALQS 459 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 268 bits (686), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 174/470 (37%), Positives = 261/470 (55%), Gaps = 21/470 (4%) Query: 2 IDSLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGA 61 + SLR +L+ WLLIP+ + V + Y NA+ A L DR+LLAS R +A +V DG Sbjct: 8 LGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGH 67 Query: 62 PVVSVPPEALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPV---YST 115 VP AL+ F + +YY+V + L++G D P P + +YP + Sbjct: 68 VTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQ 127 Query: 116 TSFNGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAI 175 ++ +P+R+ + ++ ++D+ + + VG+TM+GR M +L RQ L+ +A Sbjct: 128 ADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAA 187 Query: 176 SLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVT 235 LV + LRPL+ LK E+ +R P L+ + +E+RP+V+A+N Y+ RL A ++ Sbjct: 188 LLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALIS 247 Query: 236 VQKRFVADAAHQLRTPLAVIDSQIQFA-RQLDDPARVAQVLASLQEGSRSMTD----LTN 290 Q+RF+ADA+HQLRTPL V+ +Q + R+L A L L EG TD L N Sbjct: 248 AQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLAN 307 Query: 291 KLLLLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNE 350 +LL L++AE + P+ L + V ELS A+ + I L E + + + N Sbjct: 308 RLLTLARAEHGAAEG-GTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS-IEANA 365 Query: 351 AQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQ-----MIITVSDNGPGIPAEVRERVF 405 L +++NL+DNA+RYTP GG VT+ + + S ++ V D+GPGIPA RE+VF Sbjct: 366 LLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAEREKVF 425 Query: 406 ERFYRNAAPDQ---PGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATV 452 E FYR A G+GLGL+IVREI + S+ LDAPAQGSGLV + Sbjct: 426 EPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRI 475 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 198 bits (503), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 6/307 (1%) Query: 139 RMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKDELAT 198 R+ V VG+T++ R ++ ++ + Q ++L +A++LV L+ L PL L+ + Sbjct: 51 RLATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRA 110 Query: 199 RRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVIDSQ 258 RRPD L+P+ +G + +E+ P+V ++N + RL+ + +QKRF+ADAAHQ++TPLA + Q Sbjct: 111 RRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQ 170 Query: 259 IQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLLAVSA 318 + A + DD V + L L + S + T L N+LL L++AE S + PV+L ++ Sbjct: 171 SELALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELAR 230 Query: 319 MVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKVTVGL 378 V+++ ++ + IDLG E ++ GN L +L NL+DNAL YTP G V + Sbjct: 231 SVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTV 290 Query: 379 EKKRSQ----MIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGS--GLGLAIVREIVQA 432 + + I+ V DNGPGIP R VFERFYR GS GLGLAIVREI Q Sbjct: 291 RARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQ 350 Query: 433 SQGSIRL 439 + ++ + Sbjct: 351 HEAALEI 357 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 182 bits (462), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 134/443 (30%), Positives = 225/443 (50%), Gaps = 16/443 (3%) Query: 4 SLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPV 63 S+R LL W++ P+A+++ + + Y N + S DR L+AS I + +G Sbjct: 10 SVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGELK 69 Query: 64 VSVPPEALELFASPAQDAVYYQVLMDDDTLLAGRPDFPA---APDFAALYP----VYSTT 116 S+P ALE++ + + Y++ D G D P+ D A+YP +Y T Sbjct: 70 ASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYEDT 129 Query: 117 SFNGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAIS 176 +NG P+RV + + + V V +TM+ R + + +L RQ LL++ +S Sbjct: 130 -YNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVVIVS 188 Query: 177 LVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTV 236 + + + L+P+ AL+ +L R D L+P+ +EL+P ++A+NQ + RL + Sbjct: 189 VTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLLDH 248 Query: 237 QKRFVADAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLS 296 Q+RFVA+A+HQLRTPLAV+ +Q+Q + D PA V + + T L N+LL L+ Sbjct: 249 QQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPV--IWQEMSGTVERATTLANQLLSLA 306 Query: 297 QAEASDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGM 356 + E + DL ++ +LS L +K +D LE E +V G+ + + Sbjct: 307 KVEQIRGRG-AQEVCDLGMLARETAVDLSPLIAEKDLDFELEA--EKILVMGHPWMIGEL 363 Query: 357 LMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQ 416 + NL+ NA+R+TP G++ + + + + + D+G GI + E VF+ F N + Sbjct: 364 ISNLLHNAIRHTPAQGRLGIRITAREDVAELLIWDSGEGIDDQAMENVFKAFSSNVS--- 420 Query: 417 PGSGLGLAIVREIVQASQGSIRL 439 GLGL I EIV + Q +I L Sbjct: 421 SAGGLGLTICGEIVDSMQATISL 443 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/465 (30%), Positives = 227/465 (48%), Gaps = 25/465 (5%) Query: 1 MIDSLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDG 60 M S+R LL WL+ P+ + + Y A A D+ L+ S + QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 61 APVVSVPPEALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAAL-YPVYSTTSFN 119 + +A ++ S D ++ V + ++ G FP P P+ Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 120 GKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLL-----LLA 174 G+P+R+ + ++ G ++ V+V +T++ R D+ H ++ ++L + Sbjct: 124 GEPVRIAA-MQVRVKNG---VIWVAVAETIRKR-----DRAHYTILLSFLVLDGALTFAS 174 Query: 175 ISLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQV 234 I +V++ + LRPL +L+ L R L + G EL+P++ A+N+ + R+N Sbjct: 175 IFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGE 234 Query: 235 TVQKRFVADAAHQLRTPLAVIDSQIQFAR-QLDDPARVAQVLASLQEGSRSMTDLTNKLL 293 Q+ F+AD AHQLRTPL + Q++ + D A+ LA + M + +LL Sbjct: 235 QAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLL 294 Query: 294 LLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGL---ALKKGIDLGLETTLESAMVNGNE 350 L+++E F ++ L++ +V E + A KK IDLG + L A + G+ Sbjct: 295 ALARSE---PGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFD--LRPARLRGDR 349 Query: 351 AQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYR 410 L ++ NLIDNA+RY+P G VTV +++ +++V D+GPGI E RE +F+RFYR Sbjct: 350 FLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYR 409 Query: 411 NAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLP 455 A GSGLGLAIVREI G I +D QG G + TV P Sbjct: 410 -ANDKVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFP 453 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,226,602 Number of extensions: 46553 Number of successful extensions: 349 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 45 Length of query: 459 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 371 Effective length of database: 1,203,190 Effective search space: 446383490 Effective search space used: 446383490 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)