BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0009.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312690|ref|YP_003776782.1| sugar ABC transporter periplasm...   863   0.0  
gi|300309781|ref|YP_003773873.1| sugar ABC transporter periplasm...   115   6e-27

>gi|300312690|ref|YP_003776782.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/423 (99%), Positives = 422/423 (99%)

Query: 1   VNKICLGAACAVLGAALPLVASAQSCNVPVLKVLAQKSLGLTVMEKSLADYQKRSGTRIE 60
           VNKICLGAACAVLGAALPLVASAQSCNVPVLKVLAQKSLGLTVMEKSLADYQKRSGTRIE
Sbjct: 11  VNKICLGAACAVLGAALPLVASAQSCNVPVLKVLAQKSLGLTVMEKSLADYQKRSGTRIE 70

Query: 61  ISYFGENDRRAKSRLDAATKAGSYQVYYVDEANVAEFASAGWIVPLLKYFPKEADYDDFL 120
           ISYFGENDRRAKSRLDAATKAGSYQVYYVDEANVAEFASAGWIVPLLKYFPK+ADYDDFL
Sbjct: 71  ISYFGENDRRAKSRLDAATKAGSYQVYYVDEANVAEFASAGWIVPLLKYFPKDADYDDFL 130

Query: 121 PGRRAVASYKDVAYFAPLIGGSDFLFYRRDLLEKAGLPVPRTLDELVADIKKLHSPPSVY 180
           PGRRAVASYKDVAYFAPLIGGSDFLFYRRDLLEKAGLPVPRTLDELVADIKKLHSPPSVY
Sbjct: 131 PGRRAVASYKDVAYFAPLIGGSDFLFYRRDLLEKAGLPVPRTLDELVADIKKLHSPPSVY 190

Query: 181 GWVARGQRGSGMNVWRWAPFMLAQGGQWTDKNNQPAFNSPAAVKATQLYADLFKYAPPGA 240
           GWVARGQRGSGMNVWRWAPFMLAQGGQWTDKNNQPAFNSPAAVKATQLYADLFKYAPPGA
Sbjct: 191 GWVARGQRGSGMNVWRWAPFMLAQGGQWTDKNNQPAFNSPAAVKATQLYADLFKYAPPGA 250

Query: 241 ATYDWSNALEAFRSGKVAFMIESTPFADWMEDSSKSSVADKVGYARPPAPLPSAAYGHGL 300
           ATYDWSNALEAFRSGKVAFMIESTPFADWMEDSSKSSVADKVGYARPPAPLPSAAYGHGL
Sbjct: 251 ATYDWSNALEAFRSGKVAFMIESTPFADWMEDSSKSSVADKVGYARPPAPLPSAAYGHGL 310

Query: 301 AISAVGAKDECTRQAAGKFIAFATGKEQEQARLREKVFSDYNRSSTIQSDYFQKNVKPQI 360
           AISAVGAKDECTRQAAGKFIAFATGKEQEQARLREKVFSDYNRSSTIQSDYFQKNVKPQI
Sbjct: 311 AISAVGAKDECTRQAAGKFIAFATGKEQEQARLREKVFSDYNRSSTIQSDYFQKNVKPQI 370

Query: 361 LAGLKDTTPVSKLTIWPSPQWPDIGDNLGVALEEVFTGTQKDIPRALDEAAQYAQDAMEH 420
           LAGLKDTTPVSKLTIWPSPQWPDIGDNLGVALEEVFTGTQKDI RALDEAAQYAQDAMEH
Sbjct: 371 LAGLKDTTPVSKLTIWPSPQWPDIGDNLGVALEEVFTGTQKDITRALDEAAQYAQDAMEH 430

Query: 421 ARK 423
           ARK
Sbjct: 431 ARK 433


>gi|300309781|ref|YP_003773873.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 147/324 (45%), Gaps = 18/324 (5%)

Query: 10  CAVLGAALPLVASAQSCNVPVLKVLAQKSLGLTVMEKSLADYQKRSGTRIEISYFGENDR 69
            A L  A P+  +  S N P +  L + +      EK+  D + R  T        E+  
Sbjct: 29  AAGLAQAEPVTLNIASINNPDMIELQKLA---PAFEKANPDIKLRWVT------MEESVL 79

Query: 70  RAKSRLDAATKAGSYQVYYVDEANVAEFASAGWIVPLLKYFPKEADYDDFLPGRRAVASY 129
           R +   D AT +G + +  +       +A  GW+ P+    P + D  D +   R   S 
Sbjct: 80  RQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTG-LPADYDEADLIKPVREGLSV 138

Query: 130 KDVAYFAPLIGGSDFLFYRRDLLEKAGLPVPR--TLDELVADIKKLHSP-PSVYGWVARG 186
               Y  P    S   +YR+DL E+  L +P+  T DE+     +LH P   VYG   RG
Sbjct: 139 DGKLYALPFYAESSMTYYRKDLFEQKKLTMPQRPTWDEIAKLAAQLHDPAKGVYGICLRG 198

Query: 187 QRGSGMNVWRWAPFMLAQGGQWTDKNNQPAFNSPAAVKATQLYADLF-KYAPPGAATYDW 245
           + G G N+        A GG+W D+  QP  +SP   K+   Y DL  KY PPGA++  +
Sbjct: 199 RAGWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVAFYVDLMRKYGPPGASSNGF 258

Query: 246 SNALEAFRSGKVAFMIESTPFADWMEDSSKSSVADKVGYARPPAPLPSAAYG-HGLAISA 304
           +  L  F SGK    +++T  A  +     S VADK  +A  P+P+     G H L I +
Sbjct: 259 NENLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFA--PSPMQVTDKGSHWLWIWS 316

Query: 305 VGA-KDECTRQAAGKFIAFATGKE 327
           +   K   ++ AA KF A+AT KE
Sbjct: 317 LAVPKSSKSQDAAKKFAAWATSKE 340


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,330,318
Number of extensions: 58030
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)