BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0005.p (406 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 820 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 348 6e-97 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 330 1e-91 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 328 6e-91 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 323 1e-89 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/406 (99%), Positives = 405/406 (99%) Query: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 Query: 241 NFMTGTVQRQDGQLFIETAHQRWTLTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASL 300 NF++GTVQRQDGQLFIETAHQRW LTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASL Sbjct: 241 NFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASL 300 Query: 301 TCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESG 360 TCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESG Sbjct: 301 TCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESG 360 Query: 361 ENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA 406 ENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA Sbjct: 361 ENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA 406 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 348 bits (892), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 179/365 (49%), Positives = 245/365 (67%), Gaps = 7/365 (1%) Query: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 MA + +A+ K + G ++ +D+ I DGEF VL+GPSGCGKST+LRM+AGLE+I+GG Sbjct: 1 MASVQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 Query: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 + IGGTVVN++ ++R++AMVFQNYALYPHM+V DN+AF L K+ A +D RV++ A Sbjct: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 Query: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +L L LL+R PR +SGGQ+QR A+ RAI++ P VFLFDEPLSNLDAKLR Q+R +IK L Sbjct: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 HQRL+TT++YVTHDQ+EAMT+AD++++M+DG + Q G P +LY YP NLF AGFIG+PAM Sbjct: 180 HQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAM 239 Query: 241 NFMTGTVQRQDGQLFIETAH-QRWTLTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAAS 299 NF+ T++R +E A R + V VRP+H+ I AA Sbjct: 240 NFIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIG-----AAG 294 Query: 300 LTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVES 359 V +VE GAD + +R GD +LT++ G + L D H+FD ES Sbjct: 295 QGIATKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAES 354 Query: 360 GENLS 364 G++L+ Sbjct: 355 GKSLA 359 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 330 bits (847), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 185/374 (49%), Positives = 242/374 (64%), Gaps = 30/374 (8%) Query: 1 MADIHCQALAKHYAGGPP---VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDIS 57 MA IH + + K Y G V+H +D I DGEF+V++GPSGCGKST+LRM+AGLE+IS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 58 GGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVRE 117 G + IG VVNDL +ER++AMVFQNYALYPHM+VY N+A+GL+ +EID RV+ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 118 VAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 AA+L L ALLER PR +SGGQ+QR A+ RAI++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGT 237 ++LH LRTT++YVTHDQ+EAMTL R+I+M G Q G+PAE+Y P F A FIG+ Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 238 PAMNFMTGTVQRQDGQLFIETAHQRWT--------LTG----ERFSRLRHAMAVKLAVRP 285 P MN + G + DG F E + + LTG ER L VRP Sbjct: 241 PPMNLLQGKLS-ADGASF-EVSKGNASDILRLPQPLTGAAGQERI----------LGVRP 288 Query: 286 DHVRIAGEREPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTL 345 +H+ + AA L+ + VELVE LGA+ L+ RCG Q L PA+ + G + Sbjct: 289 EHL-LPILDGSAAQLS--LEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGA 345 Query: 346 ALDQHELHVFDVES 359 + ++H FDV+S Sbjct: 346 SFGAGDVHWFDVKS 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 328 bits (840), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 179/361 (49%), Positives = 235/361 (65%), Gaps = 8/361 (2%) Query: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 MA ++ + L K Y G VL L+L I DGEF VL+GPSGCGKST+LRM+ GLE+ISGG Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 L IGG VVN LP ER +AMVFQ+YALYPHM+VY N+AFGL+ ++ID R+R AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +L ++ LL+R PR +SGGQ+QR AI RAI++ P +FLFDEPLSNLDA LR Q R +I +L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 H++L T VYVTHDQ+EAMTL D++++M +GRI QAG+P ELY+ P+NLF AGFIG+P M Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 241 NFMTGTVQR-QDGQLFIETAHQRWTLTGERFSRLRHAMAVKLAVRPDHVRIA-GEREPAA 298 NF G V R D + +E A L + AV L +R + +R G+ +P Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLH 300 Query: 299 SLTCPVSVELVEILG-ADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDV 357 + V LVE LG A+ L T G + +R G + L++ H H+FD Sbjct: 301 GV-----VNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDA 355 Query: 358 E 358 + Sbjct: 356 Q 356 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 323 bits (828), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 185/379 (48%), Positives = 248/379 (65%), Gaps = 16/379 (4%) Query: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 MA + + LAK Y V+ ++L I DGEFVV +GPSGCGKST+LRMIAGLE+IS G Sbjct: 1 MAAVSIRNLAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 Query: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 L IG +N++PA +R VAMVFQ+YALYPHMS+YDN+AFGL+ + AEID V+ A Sbjct: 60 LDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 Query: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +L+++ LL+RKPRA+SGGQ+QR AI RAI + PSVFLFDEPLSNLDA LR ++R + +L Sbjct: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 H L+TT +YVTHDQ+EAMTLAD+++++ +GRI Q GSP +LY +P N F AGFIG+P M Sbjct: 180 HDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKM 239 Query: 241 NFMTGTVQ--RQDG-QLFIETAHQRWTLTGERFSRLRHAMAVKLAVRPDHVRIAGEREPA 297 NF+ GTV + DG Q+ + +W S L+ V L VRP+H+ IA + + A Sbjct: 240 NFIDGTVAAIQADGVQVQLPGGGLQWAAVDG--STLQVGQKVTLGVRPEHLNIA-QGQAA 296 Query: 298 ASLTCPVSVELVEILGADALL--TTRCGDQTLTALVPADRLPQP-GATLTLALDQHELHV 354 C +E+LG + L + L VP D L P G+ L LA D H+ Sbjct: 297 LQARCTA----LELLGDFSYLYAAYEGSEDALILRVP-DSLDAPHGSVLPLAADPARCHL 351 Query: 355 FDVESGENLSLPDAALTAP 373 F + G+ L +++ AP Sbjct: 352 FGAD-GQALPRLASSVAAP 369 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,260,156 Number of extensions: 53413 Number of successful extensions: 600 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 391 Number of HSP's successfully gapped: 146 Length of query: 406 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 319 Effective length of database: 1,207,925 Effective search space: 385328075 Effective search space used: 385328075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)