BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0002.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312709|ref|YP_003776801.1| hypothetical protein Hsero_3412...   925   0.0  

>gi|300312709|ref|YP_003776801.1| hypothetical protein Hsero_3412
           [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/468 (97%), Positives = 464/468 (99%), Gaps = 1/468 (0%)

Query: 1   MHDIICPHCNKAFKIDEAGYADILAQVRDGAFEQQLHERLELAEQDKRNAIELARAKAEA 60
           MHDIICP+CNKAFKIDEAGYADILAQVRD AFEQQLHERLELAEQDKRNAIELARAKAEA
Sbjct: 1   MHDIICPYCNKAFKIDEAGYADILAQVRDSAFEQQLHERLELAEQDKRNAIELARAKAEA 60

Query: 61  ELQKAAAARDAEIQELKSRLDAGELAQKMAVAEAMAQVERERDKLAYDLEQARKEKQSEL 120
           ELQKAAAARDAEIQELKSRL+AGELAQKMAVAEAMAQVERERDKLAYDLEQARKEKQ++L
Sbjct: 61  ELQKAAAARDAEIQELKSRLEAGELAQKMAVAEAMAQVERERDKLAYDLEQARKEKQADL 120

Query: 121 QLAEARLAQQLQQTVSDKDAEIQALKARMESIALSQKLAVNEAVGAVEKERDELKSSLMR 180
           QLAEARLAQQLQQTVSDKDAEIQ LKARMESIALSQKLAVNEAVGAVEKERDELKSSLMR
Sbjct: 121 QLAEARLAQQLQQTVSDKDAEIQTLKARMESIALSQKLAVNEAVGAVEKERDELKSSLMR 180

Query: 181 SELEKQLAEQSLKDKYETQLKDREDMIERLRDMKARLSTKMVGETLEQHCETEFNRIRAT 240
           SELEKQLAEQSLKDKYETQLKDREDMIERLRDMKARLSTKMVGETLEQHCETEFNRIRAT
Sbjct: 181 SELEKQLAEQSLKDKYETQLKDREDMIERLRDMKARLSTKMVGETLEQHCETEFNRIRAT 240

Query: 241 AFPRAYFEKDNDARSGSKGDYIFRDTDEGGTEIVSIMFEMKNESDRTATKNRNEDFLKEL 300
           AFPRAYFEKDNDARSGSKGDYIFRDTDEGGTEIVSIMFEMKNESDRTATKNRNEDFLKEL
Sbjct: 241 AFPRAYFEKDNDARSGSKGDYIFRDTDEGGTEIVSIMFEMKNESDRTATKNRNEDFLKEL 300

Query: 301 DKDRQEKGCEYAVLVSMLEPDSELYNTGIVDVFHRYPKMYVVRPQFFIPIITLLRNAALN 360
           DKDRQEKGCEYAVLVSMLEPDSELYNTGIVDVFHRYPKMYVVRPQFFIPIITLLRNAALN
Sbjct: 301 DKDRQEKGCEYAVLVSMLEPDSELYNTGIVDVFHRYPKMYVVRPQFFIPIITLLRNAALN 360

Query: 361 SLKYKNELALVKAQNIDITNFESELDTFKAAFAKNYDLASRRFQTAIDEIDKSIDHLQKT 420
           SLKYKNELALVKAQNIDITNFESELDTFKAAFAKNYDLASRRFQTAIDEIDKSIDHLQKT
Sbjct: 361 SLKYKNELALVKAQNIDITNFESELDTFKAAFAKNYDLASRRFQTAIDEIDKSIDHLQKT 420

Query: 421 KEALLGTDRNLRLANDKAQDVTIKRLTRGNPTMAAKFAELKKEQA-DG 467
           KEALLGTDRNLRLANDKAQDVTIKRLTRGNPTMAAKFAE+ KEQ+ DG
Sbjct: 421 KEALLGTDRNLRLANDKAQDVTIKRLTRGNPTMAAKFAEINKEQSEDG 468


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,080,662
Number of extensions: 37209
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)