BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0132.p
         (561 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311429|ref|YP_003775521.1| transmembrane protein [Herbaspi...  1113   0.0  

>gi|300311429|ref|YP_003775521.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 743

 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/546 (99%), Positives = 546/546 (100%)

Query: 1   VLAEALFELARYLRIKAEFYDVRHDLAGQFNQLVRQQIVVADKQQASRDLILRDLYTKQD 60
           VLAEALFELARYLRIKAEFYDVRHDLAGQFNQLVRQQIVVADKQQASRDLILRDLYTKQD
Sbjct: 170 VLAEALFELARYLRIKAEFYDVRHDLAGQFNQLVRQQIVVADKQQASRDLILRDLYTKQD 229

Query: 61  GLLVQVHLSMLELYEQVLSTHADYAFLRQHFGDADVMVFLRDLANKAAQDIESIAYAITR 120
           GLLVQVHLSMLELYEQVLSTHADYAFLRQHFGDADVMVFLRDLANKAAQDIESIAYAITR
Sbjct: 230 GLLVQVHLSMLELYEQVLSTHADYAFLRQHFGDADVMVFLRDLANKAAQDIESIAYAITR 289

Query: 121 NKASEPTVNYKAELRAVQFEMHELAQPGPRQASEEALTILRVTYNKIRDIIELISQVHQA 180
           NKASEPTVNYKAELRAVQFEMHELAQPGPRQASEEALTILRVTYNKIRDIIELISQVHQA
Sbjct: 290 NKASEPTVNYKAELRAVQFEMHELAQPGPRQASEEALTILRVTYNKIRDIIELISQVHQA 349

Query: 181 TQNPVDPIPILPGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIANQ 240
           TQNPVDPIPILPGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIANQ
Sbjct: 350 TQNPVDPIPILPGSDMTPFLTQQKFKFNMLLVNLRWQSPIFRFAIRVALAVTTGLWIANQ 409

Query: 241 LPYMSHGYWIVLTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVL 300
           LPYMSHGYWIVLTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVL
Sbjct: 410 LPYMSHGYWIVLTIVIILKPNFSATKQRMADRLIGTVIGCLITMLILRFVHNPLGQLAVL 469

Query: 301 FAASVAAPAFTYIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDTIIGVVIATVFS 360
           FAASVAAPAFTYIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDTIIGVVIATVFS
Sbjct: 470 FAASVAAPAFTYIKYRYTAIAASVQILMLLNLLVPAGHQGVIGERLIDTIIGVVIATVFS 529

Query: 361 YVLPAWEYRDLPKLLRNVLKSSQRYLTASRDMLEGKVQDDFFYRVCRKGFMDSLAALISA 420
           YVLPAWEYRDLPKLLRNVLKSSQRYLTASRDMLEGKVQDDFFYRVCRKGFMDSLAALISA
Sbjct: 530 YVLPAWEYRDLPKLLRNVLKSSQRYLTASRDMLEGKVQDDFFYRVCRKGFMDSLAALISA 589

Query: 421 LVRMMDEPATKQRAVRELNRFIVQNYLVAAHIAALRLMLRRHQENLPQAQVSRLIEETYL 480
           LVRMMDEPATKQRAVRELNRFIVQNYLVAAHIAALRLMLRRHQENLPQAQVSRLIEETYL
Sbjct: 590 LVRMMDEPATKQRAVRELNRFIVQNYLVAAHIAALRLMLRRHQENLPQAQVSRLIEETYL 649

Query: 481 EASQHLAEAQRLLAPQPRKRGGAVTVSPQAPQDKALSGKIELIGPLPPEPVPAEASAWSG 540
           EASQHLAEAQRLLAPQPRKRGGAVTVSPQAPQDKALSGKIELIGPLPPEPVPAEASAWSG
Sbjct: 650 EASQHLAEAQRLLAPQPRKRGGAVTVSPQAPQDKALSGKIELIGPLPPEPVPAEASAWSG 709

Query: 541 WDNLRQ 546
           WDNLR+
Sbjct: 710 WDNLRR 715


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,589,173
Number of extensions: 62041
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,193,720
Effective search space: 562242120
Effective search space used: 562242120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 133 (55.8 bits)