BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0114.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310351|ref|YP_003774443.1| sugar ABC transporter periplasm...   376   e-106
gi|300313729|ref|YP_003777821.1| sugar ABC transporter periplasm...    72   3e-14

>gi|300310351|ref|YP_003774443.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  376 bits (966), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MGQAGKWSSLVGSLGSQSQVQWADGGAANAAKKYPKMTLVDAKNESANDAEKAYAKAKEI 60
           MGQAGKWSSLVGSLGSQSQVQWADGGAANAAKKYPKMTLVDAKNESANDAEKAYAKAKEI
Sbjct: 150 MGQAGKWSSLVGSLGSQSQVQWADGGAANAAKKYPKMTLVDAKNESANDAEKAYAKAKEI 209

Query: 61  LRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAKFLESGAVGGIAFW 120
           LRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAKFLESGAVGGIAFW
Sbjct: 210 LRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAKFLESGAVGGIAFW 269

Query: 121 DPKDAGLAMNKAAMMLVQGKKITDGMDLGIPGYNKVTVKKGPGVGVIVTGQAWVEVDKKN 180
           DPKDAGLAMNKAAMMLVQGKKITDGMDLGIPGYNKVTVKKGPGVGVIVTGQAWVEVDKKN
Sbjct: 270 DPKDAGLAMNKAAMMLVQGKKITDGMDLGIPGYNKVTVKKGPGVGVIVTGQAWVEVDKKN 329

Query: 181 YKQYAF 186
           YKQYAF
Sbjct: 330 YKQYAF 335


>gi|300313729|ref|YP_003777821.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score = 72.0 bits (175), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 1   MGQAGKWSSLVGSLGSQSQVQWA-DGGAANAAKKYPKMTLVDAKNESANDAEKAYAKAKE 59
           +G AG  + L  +  + +Q  W  +   A A  ++ +M LV A     + ++K+Y +A  
Sbjct: 160 IGGAGDVAILSATAQATNQNIWIGEMKKALARPEFSRMKLV-ATVYGDDQSDKSYREAIG 218

Query: 60  ILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAKFLESGAVGGIAF 119
           +LR HP +K     +++ +   G+AV +  L GKV V G GLPSE A  ++SGAV   A 
Sbjct: 219 LLRSHPGLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLPSEMAGHVKSGAVKSFAI 278

Query: 120 WDPKDAGLAMNKAAMMLVQGK 140
           W+P D G A   AA   V+GK
Sbjct: 279 WNPIDLGYAATYAAYQFVKGK 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 512,766
Number of extensions: 19817
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 3
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)