BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0113.p
         (361 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   687   0.0  
gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   250   1e-67

>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/350 (98%), Positives = 345/350 (98%)

Query: 1   MQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYAVRAA 60
           MQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYAVRAA
Sbjct: 21  MQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYAVRAA 80

Query: 61  DCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPAGADAVVMQEACEADGEHVVI 120
           DCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPAGADAVVMQEACEADGEHVVI
Sbjct: 81  DCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPAGADAVVMQEACEADGEHVVI 140

Query: 121 RHVPAAGERVRTIGEDIRQGSTILATGTRLRPQELGLAASIGQAQLQVLRRVRVAVFFTG 180
           RHVPAAGE VRTIGEDIRQGSTILA GTRLRPQELGLAASIGQAQLQVLRRVRVAVFFTG
Sbjct: 141 RHVPAAGEWVRTIGEDIRQGSTILAAGTRLRPQELGLAASIGQAQLQVLRRVRVAVFFTG 200

Query: 181 DELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLREAAREHDL 240
           DELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLREAAREHDL
Sbjct: 201 DELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLREAAREHDL 260

Query: 241 IITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVRRGEGTGEAFFMGLPGN 300
           IITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVRRGEGTGEAFFMGLPGN
Sbjct: 261 IITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVRRGEGTGEAFFMGLPGN 320

Query: 301 PVSSFVTFLLFVRPFLLRLQGLPREAVLPQAVALRADFDWPRADRLNDRL 350
           PVSSFVTFLLFVRPFLLRLQGLPREAVLPQAVALRADFDWPRADR  + L
Sbjct: 321 PVSSFVTFLLFVRPFLLRLQGLPREAVLPQAVALRADFDWPRADRRQEFL 370


>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  250 bits (638), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/320 (46%), Positives = 192/320 (60%), Gaps = 17/320 (5%)

Query: 17  PVAQREIIDTLDACERVLAEPVTASIDVPGMDNSQMDGYAVRAADCASG-QARLRVSQRI 75
           P+   E +    A  RVLA+ + + IDVP  DNS MDGYA+R  D A G + RL++   +
Sbjct: 36  PIEAVEKLPIRSALSRVLAQDIVSRIDVPAHDNSAMDGYALRGEDLAEGRELRLQIIGEV 95

Query: 76  PAG--HVGQPLEPGTAARIFTGAMMPAGADAVVMQEACEADGEHVVIRHVPA---AGERV 130
            AG    GQ + PG   RI TGA MPAG D V+ QE    D +   +   P    AG+  
Sbjct: 96  HAGDRFTGQ-VGPGQCVRIMTGAPMPAGCDTVIPQE-LTVDADQSAVTVPPGRVRAGDNR 153

Query: 131 RTIGEDIRQGSTILATGTRLRPQELGLAASIGQAQLQVLRRVRVAVFFTGDELTMPGQPL 190
           R  GED+  GS  L  G  LRP ++GL AS+G A+  V RR+RVA F TGDEL   G+PL
Sbjct: 154 RLRGEDLALGSVALPRGRILRPSDIGLLASLGLAEAPVQRRLRVAFFSTGDELRSVGEPL 213

Query: 191 KPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDSLQATRETLREAAREHDLIITSGGVSVG 250
             G +Y+SNR+ L G+L +LGC+V D G+VPD   A     R A  E D +ITSGGVSVG
Sbjct: 214 DEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPDDPAALEAAFRSACEEADAVITSGGVSVG 273

Query: 251 EEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQVR-RGEGTGEAFFMGLPGNPVSSFVTFL 309
             D+ K  + + G +  W+IAM+PG+PLAFG++R RG    EA+  GLPGNPV+  V+F 
Sbjct: 274 AADYTKQIMASLGEMAFWKIAMRPGRPLAFGRIRSRGR---EAYLFGLPGNPVAVTVSFS 330

Query: 310 LFVRPFLLRLQG-----LPR 324
            FVR  LLRL G     LPR
Sbjct: 331 FFVRDALLRLAGAEAKPLPR 350


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,135,377
Number of extensions: 48212
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,212,660
Effective search space: 333481500
Effective search space used: 333481500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)